Nicotiana sylvestris (wood tobacco): 104216839
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Entry
104216839 CDS
T05026
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03020
RNA polymerase
nsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104216839
09124 Replication and repair
03420 Nucleotide excision repair
104216839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104216839
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104216839
Enzymes [BR:
nsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104216839
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104216839
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104216839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
104216839
NCBI-ProteinID:
XP_009765275
UniProt:
A0A1U7VTM5
LinkDB
All DBs
Position
2:complement(32657811..32666141)
Genome browser
AA seq
1191 aa
AA seq
DB search
MDMEEEYEQQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEY
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLV
AKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggatatggaagaagagtacgaacaacaatacaataatgatgatgatgaagaggaaata
acccaagaggatgcttgggctgtcatcagtgcttacttcgaagagaaggggcttgtccga
cagcaactggattcgtttgatgagtttattcagaacactatgcaagaaattgtggatgaa
tctgctgatattgagatccgacccgaatcccagcataaccctggtcaccaatctgacttt
gctgagacaatctacaaaatcaactttggtcagatttatttgagtaagccaatgatgaca
gagtcagatggcgaaactgctaccttgtttccaaaagctgcaaggttgaggaatttgaca
tactctgcgcccttgtatgtggatgttacaaagagagtcatcaagaaagggcatgatggt
gaagaagttactgaaactcaggacttcacaaaagtcttcattggaaaggttcctataatg
cttcggtcaagttactgcacattatatcaaaattcagagaaagatctaacagagcttgga
gaatgtccattagatcaaggtggatacttcattatcaatggaagtgaaaaggtcctaatt
gctcaggagaagatgagcaccaaccatgtgtatgtatttaagaagaggcaacctaacaag
tatgccttcgttgcggaagtcaggtcaatggcagaatctcaaaaccgcccgccgagtact
atgtttgtgcggatgctctcaagaactagtgcaaaagggggttcctcaggccagtacatt
cgggcgacacttccatatatccggacagagattcctatcattatcgtgtttcgagctcta
ggttttgtggctgataaggatatattggagcatatttgttatgatttcaatgatactcaa
atgatggagttgttacgtccgtcgttggaagaagcttttgttatacaaaaccaacaggtt
gctcttgactacatcgggaagagaggggctacagttggtgttacaagggaaaagaggata
aagtatgccaaagagattcttcagaaagaaatgcttcctcatgttgggattggagagtat
tgtgaaacaaagaaagcgtattattttgggtatatcatccaccggcttctgttatgtgcg
cttggccgaagggctgaggatgatagggatcactatggaaataagagactggatcttgct
ggtcctttgcttggtggcctgtttcgaatgctctttagaaagttgacaagggatgttaga
gcctatgttcagaagtgtgttgacaatggaaaagatgtaaaccttcaatttgcaatcaaa
gctaaaaccattaccagtgggctgaaatactctcttgctactggaaactgggggcaagct
aatgcagcgggtacaagagctggtgtttcacaggtgttgaatcgtctgacttatgcttct
actttgtctcacttgcgaaggttgaattccccaataggacgagaagggaaactggccaaa
ccaaggcaattgcataattcacagtggggaatgatgtgtcctgcagaaacaccagagggt
caagcatgtgggctggtgaagaatctagccttgatggtttatataacagttggttcagcg
gcatatccaattctggagtttctggaagagtggggtactgagaactttgaggaaatttct
cctgccgtaattccacaggctacaaagatatttgtcaatggtacctgggtgggaattcat
cgcgatcctgacatgttggtgagaacactgagacgacttaggagaagggttgacgtcaat
actgaagtcggggtggttcgtgatatccgtttgaaagaacttcgaatttatacagactat
gggaggtgcagtcgtccattatttattgtggaaaagcaaaggctgctgatcaagaagaag
gatattcaaacattgcaacaacgggaatcacctgaagagggtggctggcacgatctggtg
gctaagggatacatcgagtacattgacactgaagaagaagaaacaacgatgataagcatg
actataaacgatcttgtgcaagcacgccttaatcctgaggaagcatattctgatacctat
acccactgtgagattcacccgtcactaatattgggtgtttgtgcatcaattattccgttt
cctgatcataatcagtctccccgtaatacttatcagtcagctatgggtaagcaagccatg
gggatttatgtcaccaactaccaatttcggatggacacattggcctatgtgctttattat
cctcagaagcctcttgtcacaacacgagccatggaacacttgcatttcaggcaactacct
gcaggcatcaatgcaattgttgccatttcctgctactctggatacaatcaagaggattct
gtcattatgaatcagtcatcgattgatcgtggatttttccgatcactatttttccgttca
tacagggatgaggaaaagaagatggggacattggtcaaggaggactttggacgtcctgat
agagcttctactatgggtatgcggcatggttcttatgataagttggatgatgatggtctt
gcccctccgggaactagagtttctggtgaggatgtaatcattgggaagacaactcccatt
tctcaagatgatgcacaagggcaagcctctcgctatacaaggaaagatcacagtaccagt
ctccgccatagtgaaactggaatggtagatcaggttctattaacaacaaatgctgacggg
ctcagatttgttaaagtgagggttagatcagtccgcattcctcaaattggggataagttt
agcagtaggcatggtcagaagggaacagttggcatgacgtatacacaagaagatatgcca
tggactgtggaaggcattactcctgatatcattgtgaatcctcatgctattccttctcga
atgactatcggtcagctgattgagtgtattatgggaaaggttgccgcacacatgggaaaa
gagggtgatgccactccctttacagatgttactgtggataacatcagcaaagctttgcat
aaatgtggataccagatgcgtggttttgagaccatgtataatggtcacactgggcggcgg
cttagtgcgatgatattccttggtcccacgtactaccagcgactgaagcacatggttgat
gacaagattcattctagaggcagaggccctgtgcaaatcctcacaaggcagcctgcggaa
ggtcggtcacgtgatggtggtcttcgattcggagagatggagcgagattgtatgattgct
cacggtgctgctcattttctcaaagagcggttatttgaccaaagtgatgcatatagagtt
catgtttgtgagcgatgtgggctgattgctattgcaaacctcaagaagagttcttttgaa
tgcagaggttgcaagaacaagactgatattgtccaggtccacattccatatgcatgcaag
ttgcttttccaggagctaatggctatggctatagctccaagaatgcttacaaaggatgtc
aaacaagccaaagatcaaaagaaaaaaggagcttga
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