Nicotiana sylvestris (wood tobacco): 104217271
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Entry
104217271 CDS
T05026
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104217271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104217271
Spliceosome [BR:
nsy03041
]
Complex A
U1 snRNP components
U1 related factors
104217271
Complex B
104217271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
104217271
NCBI-ProteinID:
XP_009765767
UniProt:
A0A1U7VCJ6
LinkDB
All DBs
Position
11:58678683..58707038
Genome browser
AA seq
1034 aa
AA seq
DB search
MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQFRPAVSTQQGQPFASSISASPQYRPVG
QTSNAGMPPGHHSQIPQFSQPMQQFPPRPNQPGHGILLSQAIQMPFIQSSMPQPQQVIPP
LNSHMPGVSGAGNPFSSSYTVQSSSQMHVPSFPSGGQPWLSSGSQNTPVTAPTLLTNQQL
SAIAPSVPAGTASPQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTPLERADASTV
WKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEKSAGQVVQTGASTTSGVQVTAAV
TSTEQPSAVTPVSSTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSS
GVSSPAVSGSTGSAALANASQTQMSGFENLSPQVSSSLSGASIQDIEEAKKGMAVAGKVN
VVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTL
GERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDE
RFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRQNRLEYRHFLETCGFIKVDTQWRKV
QDLLEDDERCLRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRTERKNRDAFRKMME
EQITAGTLTAKTSWRDYCQMVKESVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIR
VKDVVKSEKITISSTWTFEDFKATILEGIGSPSIHDVNLQLIFEDLIERAKEKEEKETKK
RQRLAKDFTDKLSTIKEITASSSWEECKELVEDTSEFRAIGEETISRAVFEEYVAWLQEK
AKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKERDKEKERGNERATKDEADSE
SMDVTDNYEPKEERKREKDRERKHRKRHHISNDEVTSDKDEKEEPERDKERKHRKRHHSS
NDELASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGGY
EELEDGELGEDGES
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctccgccatctggtccacagcctctttggcctccttcagttggatcc
acaccacctcaaggttttggttcatcatttcccatgcaatttcgacctgctgtatcaaca
cagcaaggccagccctttgcttcatcaatttcagcctctccacagtatcgccctgttgga
caaacatcaaatgctggaatgcctcctggtcatcatagtcaaataccccagttttctcaa
ccaatgcaacagtttcccccgaggcccaatcagcctggccatggtatacttttatctcag
gcaattcagatgccatttatccaatcaagtatgccacaacctcaacaagtcattccgcct
ttgaatagtcacatgcctggtgttagtggtgctggaaatccattttcatcatcatatacg
gttcaatcgtcatcccaaatgcatgttccttctttcccttcgggggggcaaccttggctg
tcatctggaagtcaaaacacaccagtgactgcccctactttactgaccaatcagcaattg
tcagctatagctccatccgttccggcgggcacagcttcaccacagaatgcgtctgactgg
caagagtatgaagctgctgatgggagacgatattactacaataaaattacaaagcaatcc
agctgggagaagcctttggagctgatgacacctttagagagagctgatgcgtcgacggta
tggaaagaattcacaactgcagatggtcgaaagtattactacaacaaagaaacaaagcag
tctaagtggacaatacctgaggaactaaagttggctcgtgaactggcggaaaaatctgct
ggtcaagtagttcagaccggagcaagcacaacttctggtgtgcaagtcactgcagctgta
acttcaacagaacaaccatctgctgtcaccccggttagctccaccccttcttcaacggtt
tctggagtagcttcaagccctgttccagttacatctgctgtttctgatcatgcttcacct
ctggtggtttctggatcatcagccattcctgctgtgacccctgcgatgccaagttcatct
ggtgtctcttcacccgctgtttcagggagtacaggatctgctgctctagctaatgccagt
cagacacaaatgagtggctttgaaaatttatctccgcaagtttctagttctttaagtgga
gcttctattcaggatattgaggaggcaaagaagggcatggcagttgctgggaaggttaat
gtggtacctgcagaggagaaaacaacagaagaagaaccttttctatatgcgaccaagcag
gaggctaaaaatgcgttcaaagcgctgctagagtttgctaatgttgaatctgattggaca
tgggagcagacaatgcgagtaataatcaacgataagcgatatggcgctctgaaaactctt
ggtgagcggaaacaggcattcaatgagtacttgatgcaaaggaagaaacaggaggctgag
gagaggcgccatagacaaagaaaggcaaaagaagaattcacaaagatgttagaggagtcc
aaggaactcatttcatctactagatggagtaaggcagtaaccatgtttgaggatgatgaa
cggttcaaggccgttgaacgagaggctgatcgtgaagatctcttcaggaactacttggtg
gatctgcagaaaaaggagagggcaaaggctcaagaggagtatcgacaaaatagattggag
tacagacattttttggagacttgtggctttatcaaggtagatacccagtggcgcaaagtc
caagatcttctggaagatgatgaaagatgtttgcgccttgaaaaaatcgatcgtttagat
attttccaggaatacatccgtgacctggagaaggaggacgaagaacagagaaaattgcaa
aaggaacaattgaggcgcacagagcgtaagaaccgggatgcatttcgaaagatgatggag
gagcaaatcactgcaggcacgcttactgcgaaaacatcttggcgtgattattgtcagatg
gttaaggagtctgtggcttatcaggctgttgcatcaaacacttctggttcgacaccaaag
gatttgtttgaagatgtcgttgaagagttggaaaaacagtaccatgaagacaagattcga
gtaaaagatgtagttaagtcagaaaagatcacgatctcatcaacatggacattcgaagac
tttaaagctactattttggaaggaattggttccccatccattcatgatgttaatctacag
ctcatttttgaggatctaattgagagagcaaaggagaaagaagaaaaagaaactaaaaag
cgtcaaaggcttgcaaaagatttcactgacaagcttagtaccattaaggaaataactgct
tcctctagttgggaggagtgcaaagaacttgtggaggacacctcagagttcagagctatt
ggtgaagaaacaatctcaagggcagtctttgaggaatacgttgcatggttgcaggagaag
gcaaaggaaaaagaacgcagacgagaggaggaaaaggccaaaaaggagaaagaaaaagag
gaaaaagagaagagaaaggataaggagagaagggaaaaagagagagagaaggaaaaagag
cgtgacaaggaaaaagaaaggggaaacgaacgagcaacaaaagatgaggcagatagcgag
agtatggatgttacagataactatgagcccaaagaagagagaaaaagagaaaaagacaga
gagaggaaacatcggaagcgacaccatatctctaacgatgaggtgacttctgacaaggat
gagaaagaggaacctgaaagagacaaggagaggaaacaccggaagcgacaccatagctct
aacgatgagctggcatctgacaaggacgagaaagaggaatctaaaaggtcccgccgacat
agcagtgatcgtaaaaagtcaaagaagcttgcacactcacctgaatccgatggtgaaagt
cggcataaaagacacagaagagatcatagggatggatcacgtcgaaatggtggtggttat
gaagagttagaagatggggagcttggtgaagatggagaaagttga
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integrated database retrieval system
