Nicotiana sylvestris (wood tobacco): 104217426
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Entry
104217426 CDS
T05026
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104217426
Spliceosome [BR:
nsy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104217426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
104217426
NCBI-ProteinID:
XP_009765976
UniProt:
A0A1U7VI07
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Position
2:complement(49312978..49340867)
Genome browser
AA seq
1255 aa
AA seq
DB search
MEVQNHNAAEGPLPIEVHHERLNEMISGGSQDLDSWTSLISEIEKTYHDDRNTICLAFDS
FLSKFPLCHWNWKKYAYHEARLCNAEKAVEIFERAVESTPFSVGLWVDYCTFAVSSFEDP
SDIRRLFTKGISLVGKDYFCHVLWDKYMSFEFSQEQWGFLALVYVQALRFPTKKLHKYYE
NFKKFVTNLEEGILHLSDDSGEVQLKELSDATLVLSSGEIAQVVKDIQDPSDDSVRLKAL
YKYKYGGNQLYQKACQVENKIRSFESNIQRRYFQATPLDNDELKNWHDYLDFIEKQEDFD
WALKLYERCLISCANYPEFWMRYVDFMETKGGRELAMFALERATKVFSKNVPEIHLFTAR
YMEQIGDPDGARASFPPIIIDWDSYFIQNVTNRANMEKRLGNCTAACDIYERAIKMAVEE
EKLQFLPTLYIFYYRLKHMITASVGAARDVIIDGIKRIPDCKLLYEELIRFAMAHEGTKQ
LSRVDSVIANAISPVSDVSQGLDIKDRESISILFLELVDLCGSISEIRMAWSRHIKLFPH
FIRTNGSSKHSGTGKSSLNSFTEQRRNISNVLVNQPSKGPSSGHLIQHSKGEEAHQLPLK
DGEQPDQLSAEPSLTVDNDKGTTGKQGQLSSKMEDLSGGDGSGKNELSFNPVDQSKDDTS
MSMELSHDPPQQRREDLPGPMDFSYDSVPQSGDDASKSPGPVLDFKEPSRPLSLSEASQE
HPSSENVRQDEDVDLEQLPTPVSLENLSLVSEEKETQGLASMHSDGLESGEQIPSSSTGR
PQDPLNDGDGPASCSSPATCLFSTSAEMHPGPVTAESSQQINDTVAVPESGSSKVPAGLD
QQQELQRAASQEQHLLDSQSDPQIQQVLEKATMQCQSGTSQGNIPSTQCWPLNNMPQQIS
MSGHHPQVSSSPVSYSQPSTPQRSVHNSQQIGPNPHYEALNQTSQDISLSENHPQVSSSH
VSYSQPSTPQHSGQSSQQIGPSHHQEALSQTSQHHYQQQHLLHGQYQQHQLQLQQPHTSM
QQQQMHQHPSQQLYQQHLLQQQQTLISQQQQYFQQIQSFPYSQQQFLLNQLQYLPQSQQL
WQQQAQQMQPQEPQQTQQHYLQSQEQQLQQYRQSQELAYQMQQHGYQLLLHQYQVRQQGY
QSMQQQQQWQQQGHFQLQEDSHLQQQYHHLEQQTDEEYNQTHQGQRVAVQHSSGTPAPES
ESPEISRQPHSTERSKYSVSPYRRAPAHGISPSHSTGTLASEASSFSRTNSSREK
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacagaatcacaatgctgccgagggacctcttcccattgaagttcatcatgaa
agacttaacgagatgatttctggagggtcacaagaccttgattcttggacctcactgata
tcagagattgagaaaacctaccatgatgatagaaatacgatttgcttggcttttgactcc
tttttgtctaagtttccactgtgccactggaattggaaaaaatatgcctatcacgaggca
cgactatgcaatgctgaaaaagctgttgaaatctttgagcgtgctgtggaatcaacacca
ttttctgttggtctgtgggttgactattgtacctttgccgtgagttctttcgaggatcca
tctgatattcgtaggttgtttaccaaaggaatctcccttgttgggaaggactacttctgt
catgtcttatgggacaagtacatgtcctttgagttctcgcaggagcagtggggtttcctt
gctctagtttatgtacaggctctacgcttccccacaaagaagttgcataagtactatgag
aactttaagaagtttgtaaccaatttagaagaggggattctacatctcagtgatgacagt
ggtgaagtacaactaaaagagctatcagatgcaacacttgtgttatcgagtggagaaatt
gctcaagttgttaaggatatccaggatcctagtgatgattcagtcaggttgaaagcactg
tataagtacaaatatggtggaaatcagctataccaaaaagcatgtcaagtagagaacaaa
attagaagttttgaatcaaacatccagaggcgatatttccaggcaactcctcttgacaac
gatgagctgaagaactggcatgattatctcgacttcattgaaaagcaagaagattttgat
tgggccctaaaactttatgagaggtgcttgatatcctgtgccaactaccctgagttctgg
atgcgttatgtggatttcatggagactaagggcggacgagagctagcaatgtttgcttta
gaacgagcaacgaaagttttctcgaagaatgttccagaaatccatctttttactgctaga
tatatggagcaaattggagatccagatggtgctcgtgcttcctttcctcctattattata
gattgggactcctatttcattcaaaatgttactaatcgagcaaatatggaaaaacgtctg
ggaaattgcacagctgcttgtgatatttacgaaagagcaattaaaatggcagtggaggag
gagaaattgcaattccttcctacgctatacattttttattatcgtctcaaacacatgatc
actgctagtgtgggggctgcaagagatgtaataattgatggaataaagcgtatccctgat
tgcaaacttctttatgaggaactgataagatttgcaatggcgcatgaaggaactaagcaa
ttgagcagagtagactcggtcatagctaatgcaatctctccggtgtcggacgtatcccaa
ggtttggatataaaagatcgagagagtatatctatattatttttggagttagttgatctt
tgtggttctatctctgagataagaatggcatggagtcgacacatcaaattatttcctcac
ttcataaggaccaatggctcatcgaaacactcaggtactgggaagagttcactgaacagc
tttactgaacaaaggagaaacatttccaatgtcttagttaatcagccgtcaaaaggacca
agctctggccatttgatccagcactccaaaggagaggaggcacatcaactgccgcttaaa
gatggtgagcaaccagaccagctttctgcagagccgtcattaactgtagataatgacaaa
ggtacgactggtaaacagggacagctatcttccaaaatggaagatctatccggtggagat
ggctctgggaaaaatgagttatcttttaaccctgttgatcaatcaaaggatgatacatcg
atgtcgatggaactaagtcatgatccgccgcagcagaggagagaagatttgcctggacca
atggacttctcttatgattccgtacctcaatctggagatgatgcatccaagtctcctggg
ccagttctggactttaaagagccctcaaggcccctttctctttcagaagcctcacaagaa
catccaagttcagaaaatgtccgtcaagatgaggatgttgatcttgaacagctaccgacg
ccggtttctttggagaatctttccttggtttctgaggaaaaggaaacccagggccttgcc
tccatgcactctgatggtctagaaagtggtgaacaaattccctcatcaagcacgggcaga
ccgcaagatcctctaaatgatggagatggaccagctagttgttcatctccagcaacatgt
ctgttttccacatcagcagaaatgcatccaggtcctgttactgctgaaagttcacagcag
ataaatgatacagtcgcagttcctgaaagtggtagttcaaaggtgcctgcaggattggat
cagcaacaggagctacaacgagctgcttcacaagaacagcacttacttgattctcagagt
gatccgcagatccaacaggtcctggaaaaggctactatgcagtgtcaatcaggtacttct
caggggaatatcccaagtacacaatgctggccattgaataatatgccacagcagatctcc
atgtctggacaccatccccaagtgtcttcttcacctgtttcttattcacaaccaagtaca
cctcaacgttctgtgcacaatagccagcaaattgggcccaatccccattacgaagcattg
aatcaaacatcacaggacatctccctatctgaaaaccaccctcaagtctcttcctcacat
gtttcttattctcaaccaagtacgccgcaacattctgggcagagtagccagcaaattggg
ccctcacaccaccaggaagcattgagtcaaacgtcacaacaccattaccagcagcagcat
cttttgcacggacagtatcagcagcatcagctccaactgcagcagccccacactagtatg
caacagcaacagatgcatcaacatccaagtcagcagctgtatcagcagcaccttcttcag
cagcagcaaacacttatatcgcaacagcaacagtatttccagcaaattcagtctttccct
tattcacaacagcaatttctcctgaaccagctacagtatttaccgcagtcgcagcagcta
tggcaacagcaagcacaacagatgcaaccacaggaaccccagcaaacacagcagcactat
ctgcaatcacaggagcagcagctacagcaatatcgccagtcacaagaacttgcataccag
atgcaacaacatggttatcaactactcttgcaccagtaccaagtacgtcaacaaggatat
cagagtatgcagcaacagcaacaatggcaacaacagggacatttccaattacaggaagac
agtcacctgcagcagcaatatcatcatctggagcagcaaacagatgaggaatacaatcaa
acccatcagggccaacgggtcgcggttcaacattcttcgggaactcctgctcctgaatca
gaatcaccagaaatttcaaggcaaccacattcgacagaaagatctaaatattctgtatcc
ccttataggcgggcccctgctcatggaatatcaccttcacatagtactggcacattggca
tcagaggcttcttcattttcgaggacaaattcttcccgagagaagtga
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