Nicotiana sylvestris (wood tobacco): 104218058
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Entry
104218058 CDS
T05026
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104218058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104218058
03036 Chromosome and associated proteins [BR:
nsy03036
]
104218058
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104218058
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104218058
PBAF complex
104218058
GBAF(ncBAF) complex
104218058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
NPV_P10
Myb_DNA-bind_6
ZZ
SNAPC3
Cript
DUF919
Motif
Other DBs
NCBI-GeneID:
104218058
NCBI-ProteinID:
XP_009766760
UniProt:
A0A1U7VXP6
LinkDB
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Position
3:157052026..157056145
Genome browser
AA seq
579 aa
AA seq
DB search
MDTSRSQNPNHLKPSDEPDHDLYTIPSYTSWFSWQSIHEVERLSLREFFDGSSITRTPRI
YKEYRDFIITSYREDPTRKLTFTEVRKSLVGDISVLHKVFTFLEKWGLINFDPSNTEIAP
AVIGAAEEEDNKEDEKWRIRVEEGAPHGVRVVAAPHSLKPLVPVPSPVVVGDGGGGRGRS
GDVADSVVKASPLASYSDVYGKSMDPQKKESVVCDSCKEQCASGHYEYIKNASYNLCEKC
FKSGNYDKDKLADEFKLMDGANSKAVWTEAETLLLLESVLKHGDDWDLVAQNVKTKSKLD
CISKLIQLPFGDLMLGSIHKKIKHLDTNGEVSSVDQAQGAISESGETPGNQSHEQNQEHQ
QNGDGEDKTPPLKKIRRAPIAEASSFLMKQVARISGAVGPHITASAAEAAVTALCYENQC
STDIFDEDDDGLGSIADISETERGSQDESAKGEEKSASSETEVAVSQRNTIPLTLRMRAA
TATALGAAAAHAKLLADQEEREVEYQVSTLVEAQVKKLQRKMKHVEALNLMMEKQHAQMK
DLEDSLVTERMDILQKIFSAGVSRWSDHASAKSQSSSIA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggatacatctcgctcccaaaaccctaatcacctaaaaccctccgacgagcctgaccac
gatctttatacaatccctagttacacaagttggttttcttggcaaagcatacacgaagta
gagaggctatcattgcgagaattcttcgatggcagttcaattacaaggacgcccaggatt
tacaaagagtacagggatttcattattacctcctaccgtgaggatccgacccgaaaactc
actttcacggaggtccggaagtcattagtgggcgatataagcgtgctccacaaggtattt
acttttctagagaagtggggtttgatcaattttgaccctagtaatactgaaatagcgccg
gcggttattggtgctgcggaggaagaggataataaggaggatgagaagtggaggattagg
gttgaagaaggggccccacatggggttagggttgtggcagctcctcattctttgaagccc
cttgtgccggttccgtctccggtggtcgtcggggacggaggtggtggcagggggaggagt
ggtgatgtggcagatagtgtagtaaaggcgtcacctttggcgtcctattcggatgtttat
gggaagtcgatggatccacaaaagaaggaaagtgtagtgtgtgatagttgcaaagaacag
tgtgcttcgggtcattatgagtacatcaagaatgcaagctataatttatgcgagaagtgc
tttaaaagtggtaattatgacaaggacaaattggcagatgagttcaagttgatggatggt
gcgaactccaaggctgtctggactgaagcagaaaccttactcctattagaatctgtattg
aagcatggtgatgactgggatcttgttgctcaaaatgtcaaaacaaagagtaaactggat
tgtatctcaaagcttatacagttgcctttcggggatcttatgcttggttctattcacaaa
aagattaaacatttggacacaaatggtgaggtaagcagcgtggatcaagctcaaggtgca
ataagtgagtctggagaaactcctggaaatcaatctcatgagcagaaccaggagcatcaa
cagaatggagatggtgaagacaaaacccctcctctcaagaaaatacgcagggctccaatt
gcagaagccagtagtttcctgatgaaacaggtggctcggatctctggtgctgttggtcca
catatcacagcatctgcagctgaggctgctgttaccgccctttgctacgagaaccagtgt
tcaacggacatttttgatgaagatgatgatggattgggatcaattgctgatatcagtgag
acagagagagggagtcaagatgaaagtgctaaaggggaggaaaagtctgccagctcagaa
acagaggtggcagtctcccaaaggaatactatacctctaactttacgcatgagggccgca
actgcaactgctctcggcgctgctgctgctcatgccaaattgttggctgatcaggaagag
agagaagtagaatatcaggtttctactttagtcgaagcacaggtgaagaagttgcaacgt
aaaatgaaacatgtcgaagctctgaacctgatgatggagaagcaacatgcccaaatgaag
gatttagaagattctttagttacggaaagaatggacatcttgcagaagatatttagcgcg
ggggtatctagatggagtgatcatgcttctgccaaatctcaaagtagcagcatagcttga
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