Nicotiana sylvestris (wood tobacco): 104219674
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Entry
104219674 CDS
T05026
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104219674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104219674
03012 Translation factors [BR:
nsy03012
]
104219674
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104219674
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104219674
Translation factors [BR:
nsy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104219674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_16
ATPase
AAA_19
ABC_tran
T2SSE
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104219674
NCBI-ProteinID:
XP_009768678
UniProt:
A0A1U7VQK7
LinkDB
All DBs
Position
9:40567776..40610813
Genome browser
AA seq
1168 aa
AA seq
DB search
MHSRVGFLLACTKRRSSYFSTCSTLLSNLFSSNSNRNIFAACHRRILIGSDVSKVYYLPD
SNFRWLGQPRGFCRYPATAALEQFSDDEYECDYENHPASSSVANIDEWKWKLSLLLRNEK
DQEVVSRDKRDRRDYEQICNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVV
IPLSLQRRVEGLLQEHIDRTQLISGKAENILDGTNSSDMVEDVNLDENPDSFLDGSVMEK
VLQRRSLRMRNMQRAWQESPDGNKMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCG
KTTQLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLE
GVKGKNTHLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRP
DLRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRAHFLEDLLEITGYKLTSFNQIDDY
GQEKMWKTQKQLAPRKKKNQITALVEDALNKSNFESYSARARDSLACWAPDCIGFNLIEA
VLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLI
FEKAPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASA
RQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLS
AALQPPEPLAVQNAIQFLKMIGALDENEYLTHLGKFLAILPVDPKLGKMLIMGAIFRCFD
PVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAY
EYCWRNFLSAQTLQAIHSLRKQFIFILKDAGLLDADTATNNKLSYNQSLVRAVICSGLYP
GIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGV
SDSIVILFGSTLGCGDTAGHLKMLSGYIEFFMDPTLADCYIKLKEELEMLLQKKLQDPEV
DIHKEGKYLMLAVQELVSGDQCEGRFVFGRENKRPKDSKDTDRFTRDGTNPKSLLQTLMM
RAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQTSEKN
HDEDDKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgagagtagggtttctcttagcatgcacaaaacggaggtcttcttatttttct
acttgctctacacttctctctaatctattctcttccaattcaaaccggaatatattcgcg
gcttgccaccggcgaattttgatcggcagtgatgtaagtaaggtttattatttaccggat
tcgaattttcgttggttgggacagccgcgtgggttttgtaggtaccctgctaccgccgcg
ttggagcaattctccgacgatgaatatgaatgcgactacgaaaatcatccggcttcatca
tcagtggccaatatagatgagtggaaatggaaacttagcctgctgctgcgtaacgaaaag
gaccaagaggttgtatccagagataagagggatagaagagactatgagcagatatgcaac
cttgccaaaaggatgggtctctatagtgaaatttatggaaaagttgtagtggtgagcaag
gttcctcttccaaattacagacccgatcttgatgataagcggcctcaaagagaggtagta
atcccactaagtttgcaaaggagagtagaaggcttgcttcaggagcatattgatagaaca
cagctcattagtggaaaagctgaaaacattttagatggaactaactcctctgatatggtt
gaagatgtgaacttggatgaaaatccagattcattcttagatggctctgtcatggagaag
gttcttcagaggcggagcttacgcatgcgtaatatgcagagggcttggcaggaatctcct
gatggcaacaaaatgctcgaatttcggaaatctcttcctgcatttaaggaaaaagaaagg
ttgctccaagcaattgcacgtaatcaggtggttgtaatttctggcgagacaggatgtggt
aagaccactcaactgccacagtacattctagagtcagaaatagaatctggtcgtggagca
ttttgtagcataatttgtacacagcctcgaagaatatctgctttggcggttgcagaaaga
gtggctacagagaggggagaacctcttggtgactcagtggggtacaaagtacgattagaa
ggggtgaaaggaaaaaatacacatttactattttgcacaagtggtattttgcttcgtcgt
cttctcagtgaccgcaatcttgacggtataacccatgttttcgttgatgagattcatgag
cgaggcatgaatgaagacttcctgttgattgtgttgaaggatcttcttccacgacgccca
gatttgagattgattttaatgagtgctactcttaatgctgaattattttccagttacttt
ggaggggcaccgatgattcatatcccgggcttcacatatcctgtaagagcacattttctg
gaagatttgctggaaataacagggtataagttgacttcgttcaaccaaattgatgattat
ggtcaggagaagatgtggaaaacacaaaaacagttagcaccccgcaaaaagaaaaatcag
ataactgctcttgttgaggatgctctaaacaaatcaaacttcgagagttatagtgcaagg
gcacgtgattcactagcatgctgggctcctgattgtattggattcaatcttattgaggcg
gttttgtgccatatatgtcgaaaagaacgtccaggtgctgtattagtatttatgactggt
tgggaagatattagttgtttaagagatcaacttaaagcccatcctctcttgggagaccca
aatagagtgttgttgctcacttgtcatggttctatggcaacctctgagcagaaactcata
tttgagaaggcacctcagaatgtacgtaaaatagtacttgcaacaaacatggccgaggca
agtattactataaatgatgttgtctttgtagtggactgtggaaaagcgaaggagacgacc
tatgacgcgttaaataatactccatgtttattaccttcatggatttcacaagcctctgcc
cgacaaagaaggggcagggctggccgtgtgcaaccaggcgagtgttaccacttatatcca
cgatgtgtttatgaagcttttgctgaatatcaactacctgaactcctgagaactcctttg
aattctctttgcttgcaaataaagagtttgcaggttggaagtattgctgaatttctatca
gctgctcttcagccgccagaaccattggctgtgcaaaatgctattcagtttttgaagatg
attggtgcattagatgaaaatgagtatcttacacatctaggaaagtttttagcaattctc
cctgtggatcccaagcttgggaaaatgctcattatgggtgctattttccgttgctttgat
cctgttttgactatagtggctggtcttagcgtgcgggatccatttctattgccgcaagac
aaaaaggatttagcggggactgcaaagtctagattctcagccaaagactacagtgaccat
atggcgcttgtccgtgcatatgaaggatggaaagatgctgaaagggaaggttctgcctac
gagtactgctggaggaatttcctttctgcccagactcttcaagcaatccattctcttaga
aagcaatttatcttcatcttgaaagatgctggattgcttgatgctgatactgcaactaac
aataaactaagttacaatcagtctttggttcgtgcagtcatatgttctggcttgtatcct
ggaatcgcatcggtagtgcacagagagacatcaatgtccttcaagactatggatgatgga
caagtcttgctttatgctaattcagtcaatgctcgttatcaaacgattccatacccttgg
ttggtgtttggtgaaaaagtgaaggtcaatacagtcttcatacgagattctactggagta
tctgattcgattgtgatcctatttggtagtactctaggctgcggagatacggctgggcat
ttaaagatgttgagtggatacatagagttcttcatggatcctactcttgcggattgctac
ataaagctcaaagaggagcttgaaatgcttttgcaaaagaagcttcaagatcctgaggtc
gacatccacaaggaaggcaaataccttatgcttgcagttcaggaactggtttcaggagat
cagtgtgagggaaggtttgtgtttggtcgtgaaaacaagaggcctaaagattctaaagac
actgatagatttacaagggatgggacaaacccaaagagtttgctgcaaaccctaatgatg
agggcaggtcactcccctccgaagtacaaaacaaagcatctaaaaacaaatgaattcagg
gcacttgtagagttcaagggaatgcaatttgtaggtaaaccaaagagaaacaaagctctt
gcagaaaaggatgctgcaatagaggcactagcttggttaactcaaacttctgagaagaat
catgatgaagatgataagtctcctcctgatgtcaccgacaacatgctgaaacttcttggt
aaacgcaggagatcaaagcgtcgctga
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