Nicotiana sylvestris (wood tobacco): 104221876
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Entry
104221876 CDS
T05026
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104221876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104221876
03012 Translation factors [BR:
nsy03012
]
104221876
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104221876
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104221876
Translation factors [BR:
nsy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104221876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
SR-25
NACHT
nSTAND3
AAA_19
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104221876
NCBI-ProteinID:
XP_009771315
UniProt:
A0A1U7WAQ9
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All DBs
Position
7:complement(106183574..106209544)
Genome browser
AA seq
1032 aa
AA seq
DB search
MSMRLLNPYSSALLHFHFRNSLSSSAPRSYVPSHFRLKSSAMSYRPNSRGGRRGGGGGGG
GRGGGGRGGGGRGGEQRWWDPVWRAERLRQQAAQMEVMNENEWWGKMEQFKRGGEQELVI
RRNFSRDDQQKLADMAYQLELYFHAYNKGKALVASKVPLPSYRVDLDERHGSTQKEIRMS
TEIEERVGNLLSSSQDTVSGGTSSSTSGSSAKLSSKALETARPKLTVENDTAKQRLNNEL
KQKQEKTRESEKVKAMISFREELPAFKVKYEFLEAVASNQVLVVSGETGCGKTTQLPQFI
LEEEISSLRGADCNIICAQPRRISAISVAARICSERGENLADTVGYQIRLESKRSAQTRL
LFCTTGVLLRQLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA
TINAELFSKYFRNAPKIHIPGLTYPVAELFLEDVLEKTRYLIKSEADSFQGSSRRRQRQQ
DSKRDPLTELFEDVDIGYHFKGYSMTTRQSLEAWSGSLLDLGLVEATIEYICRREGEGAI
LVFLTGWDDISKLLDKIKANNFLGDTRKFLILPLHGSMATINQREIFDRPSANMRKIVLA
TNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISQASAHQRRGRAGRVQPGV
CYRLYPKLIYDAMPQYQLPEILRTPLQELCLQIKSLQFGAIESFLAKALQPPDPLSVHNA
IELLKTIGALDDTEELTHLGRHLCTLPVDPNIGKMLLMGSIFQCLNPALTIAAALAHRDP
FVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKHYRKERAFCWENFLSPVTLQ
MLEDMRNQFVDLLSDIGFVDKSRGAKAYNEYSNDLEMVCAILCAGLYPNVVQCKRRGKRT
AFYTKEVGKVDIHPASVNAGVHLFPLPYLVYSEKVKTTSIYIRDSTNISDYALLMFGGNL
SPSKSGEGIEMLGGYLHFSASKSVLDLIKKLRGELDKILKRKIEEPGFDISVEGKGVVGA
VVELLHSQDIRY
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgcgccttctgaacccctactcctccgcccttctccattttcacttccgcaac
tccctttcttcatcagccccaaggagttacgttccctcacattttaggttaaaatcatcc
gctatgtcttatcgtccgaacagccgaggcggccgtcgtggcggcggcggcggcggcgga
ggccgcggtggcggtggtcgtggaggaggaggacgcggtggtgaacagagatggtgggac
cctgtttggcgtgccgaacgccttcggcaacaagccgctcagatggaggtgatgaatgaa
aatgagtggtgggggaagatggagcagtttaagagaggaggcgagcaggaattggtaata
aggcggaattttagtagggatgaccagcagaagttggctgatatggcgtatcaattagag
ctttacttccatgcttataacaaaggaaaggcacttgttgcaagcaaagtcccattgcca
agctatcgtgttgaccttgacgagcgtcatggatctacacagaaagagataaggatgtct
acggagattgaggaaagagtcggaaatctattgagtagttcacaagatactgtatctggt
gggacttcctcttcaacatctggtagttctgccaaattatcatccaaagctctagaaaca
gcaagacctaagttgactgtagagaatgatactgccaagcagagacttaataatgaactt
aaacagaaacaggaaaagacaagggaaagtgaaaaagtcaaggcaatgatctcattcagg
gaagaacttccagcatttaaagtaaaatatgaatttttggaagctgttgcaagtaatcag
gttttggtagtttctggagaaactggttgtggcaaaaccactcagctccctcaattcatt
ctagaagaggagatatcatccctccgtggtgctgactgtaacattatatgcgctcagcct
cgccgtatatctgccatatcagttgcagctagaatatgctctgaaagaggagagaatctt
gctgatactgttggttaccagatccgactggagtcaaagcgctctgctcaaacgcggttg
ctattctgcacaacaggagtgttactgcggcagctggttcaggaccctgatttgactggt
gttagccatctgcttgttgatgaaatccatgaaagaggcatgaatgaagactttctctta
ataattttacgtgacctccttcctcgacgacctgatttgcgtctcattctgatgagtgct
actattaacgctgagttgttctccaaatacttcagaaatgcacccaaaattcatataccg
ggcttgacatatccagtggcagagctgtttcttgaagacgtgttagagaagactcgttac
cttataaaatccgaagcagacagtttccagggaagctcaaggagaaggcagaggcaacaa
gattctaaaagagatcctctgactgagcttttcgaggatgtggacattggttaccatttt
aaaggctacagcatgactacaaggcaatctcttgaagcatggtctggttcactgcttgat
ttgggtcttgtggaagcaacgattgagtatatttgtcgtcgtgaaggtgaaggtgcaatt
cttgtgttcctgactggttgggatgacatttctaagctgcttgataaaattaaggctaac
aactttcttggagacaccaggaagtttttgatcctccctcttcatggttcaatggcaaca
ataaatcagcgagaaatatttgatcgcccatctgctaacatgaggaaaattgtgcttgca
accaacatagctgagagcagtataactatagatgatgtcgtgtacgtcatagactgtgga
aaggcgaaagagactagttacgatgctcttaacaagctagcttgtttattaccatcatgg
atttcacaggcctcggcacatcagagacgtggtcgtgcagggcgtgtgcaacctggagtt
tgttataggttgtatccgaaactaatatatgatgcaatgcctcaatatcaactacctgag
attcttcgaacaccattacaggagctttgtctccaaattaagagcttgcagtttggcgct
attgaatcctttctggccaaggcacttcaacctccagatcctctctctgtccacaatgcc
attgaacttctcaaaactattggagctctggatgatacagaagagcttactcatcttggc
cgccatctttgcactctacctgtggacccaaatattggaaagatgcttctgatggggtcc
atcttccaatgtctaaaccctgcactgactattgctgctgctcttgcgcaccgtgatcct
tttgtccttccaataaacaggaaagaggaagcagatgctgccaaaagatcatttgctggt
gattcttgcagtgaccatattgcacttcttaaagcatttgaaggatggaaagatgctaaa
cattatagaaaagaaagagcattctgttgggaaaatttcttgtctcctgtaacgttgcag
atgttggaagacatgagaaatcagtttgtagacctactgtcagatatcggttttgtggat
aaatcacgaggagctaaggcatacaatgagtatagcaacgatttagagatggtatgcgct
atcctttgtgcgggtctctacccaaatgttgtgcagtgtaaaagaagaggaaagcgtact
gcattttacacgaaagaagttggaaaagttgatattcaccctgcatctgttaatgctggt
gttcatcttttccctcttccatacttggtttacagtgagaaagtcaagactacaagcatt
tatatcagagattcaacaaacatatcagattatgctctccttatgtttgggggtaatctc
agtccaagcaaaagtggagagggcattgaaatgctaggaggctatcttcatttttctgca
tcaaaaagtgtgttagatttgataaagaaacttcgaggggaactggataaaatcttaaaa
aggaaaatcgaagagcccggctttgacatttcggtcgagggaaagggtgtagttggtgct
gtggttgagttacttcatagtcaagacatacgatactaa
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