Nicotiana sylvestris (wood tobacco): 104221998
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Entry
104221998 CDS
T05026
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104221998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104221998
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104221998
mRNA cycle factors
Common to processing body (P body) and stress granule
104221998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
104221998
NCBI-ProteinID:
XP_009771471
UniProt:
A0A1U7W9Y7
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Position
12:54518238..54526776
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AA seq
996 aa
AA seq
DB search
MDDDHSMDSAVDQLSREQVQRLYNKNVELENKRRKAAQARVPSDPSAWQQMRENYEAIIL
EDNAFSEQHEIEYALWQLHYRRIEELRAHFNAAVNSNVSTNSLNGKVPHHSGPDRVTKIR
TQFKTFLSEATGFYHDLMLKIRAKYGLPLGYFSDDQENQIPSSKDGNKSVEVKKGLISCH
RCLIYLGDLARYKGLYGVGDSKACDFAAASSYYLQASSLWPSSGNPHHQLAILASYSNDE
LVAIYRYFRSLAIESPFATARDNLIIAFEKNRQCYSQLVGDTKASSTKAVRPRTTGKGRS
KGETRHPLKDGRVEASSAQEKGSSMSDIFKTFSTRFVRLNGILFTRTSLETFGEVQSVVK
NDLLELLSSGTDEKYNFGSDTADCKLAFVRLVAILIFTVHNVNKESENQSYAEILQRSVL
LQNAFAAVFEFMGHVVERCVQLNDPTTSFLLPGVLVFVEWLASRQDVALGNEPEEKQTRA
RSFFWKNCIAFFNKLLSSGFKFVDDDKDDTCFFNMSRYDEGESDNRLALPEDFELRGFIP
FLPAQLILDFSRKHSFGGDGGIKEKKSRLQRIIAAGKALANVVRVGEEGIYFDGRAKKFI
IGIEPQVSDDYALNCSMEVPKLSGIELENSAAGQLTVGPLQPKQQLYVEGEEEDEVIVFK
PSVVEKHVNGSASNMMTSEGHDSGVSAASVPPGVSVASVGLGNEMGPFSAALDGLIMQSA
LHASARPPSSIANNSGQYMQPIQPSTSLWSVERAAVMNGLASLNMIGNGPTVISELQDQV
FPPEPYSVPFPQSVNFGMTNNIRVHIPDAAIPSNFSSLSSSVVGIDSMSIKSPSVMSTGI
RKNPVSRPIRHLGPPPGFGSVPSKVLEESSSAMTIKNEHTTLPPMDDYSWLDGYQLPSSH
QSIGFNNSINHSTQNYHSMSKSSSSVGMVSFPFPGKQVNSLHVQSGNQRGWEDYQISEQL
KLYQGQPQQLQSGNQQSVELPQRHEGQSLWEGHFFV
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgaccattcaatggatagtgctgtcgatcaattgtctcgcgagcaagttcag
cgcctctacaacaagaatgttgagttggagaataaacgtagaaaggcagcacaagctaga
gttccttctgacccaagtgcatggcaacaaatgcgagaaaactacgaagctatcatcctt
gaggataatgccttctcagaacaacatgaaatagagtatgccttgtggcagttgcattac
aggagaattgaggaattgcgcgcacacttcaatgctgctgtaaattctaatgtgtcaacc
aattctctgaatgggaaagttccccatcatagtggacctgatcgcgtcacaaagatcaga
acacagtttaaaacttttctttcagaagcaacaggattttatcatgatttgatgctaaaa
attagggctaagtatggcctgccgctgggatatttctctgatgatcaagaaaatcagatt
ccttcctctaaagatggtaacaaatctgtggaggtgaagaaaggattgatatcctgccat
cgttgtttgatttatcttggcgatcttgctcggtacaaaggcttatatggtgtgggtgat
tccaaagcttgtgattttgcggctgcttcgagttattacctgcaagcttcttcactttgg
ccttctagtggcaatcctcatcaccagcttgcaatactggcttcctattccaatgatgag
cttgtggctatttatcgctattttcgcagtcttgcaatagaaagcccttttgccacggca
agggataacttgatcattgcatttgagaagaaccgtcagtgttactctcaacttgtgggg
gatactaaagcttcctccaccaaggccgtacgtcctcgtacaactggcaaaggaagaagc
aaaggagaaacgaggcatccactgaaagatggtagggttgaagcaagttcagcccaggaa
aaaggttctagtatgtctgacatcttcaaaaccttcagcacaagatttgttcgattgaat
ggtattcttttcactcgcactagtttggagacttttggagaagtgcaatcggtggttaaa
aatgatctgcttgagcttctctcctctgggactgatgagaagtataattttggttctgac
actgccgactgtaaactggcttttgtgaggctcgtggccatcctaatattcactgttcat
aacgtgaataaggaaagcgaaaaccagtcatatgctgagattttacaaagatcggttctc
ctacagaatgcatttgctgctgtgtttgagttcatgggtcatgtagttgaaagatgtgtc
caattaaatgatcccacaacaagtttccttttgccaggggttttggtgtttgtagaatgg
ttagcgagccgtcaagatgttgcacttggcaacgaaccagaagagaagcaaaccagggct
agatcatttttctggaagaactgcattgctttctttaataagcttttgtctagtgggttt
aagtttgttgatgatgacaaggatgatacatgcttcttcaatatgagcaggtatgatgaa
ggagagagcgataatcgtcttgcattacccgaggattttgagctgagaggatttatacct
tttcttccggcacaacttatccttgatttttcaaggaaacattcttttggtggtgatggt
ggcatcaaagagaagaaatcacgtctccagaggataatagcagcaggaaaggctcttgct
aatgtggtccgtgttggagaagagggaatatattttgacggtagagcaaagaaattcatc
attggcattgagcctcaagtatctgatgattatgcgcttaattgctccatggaagttccc
aaattgagtggtattgagttggagaattcagctgcagggcagttaactgtaggacctctg
cagccaaagcagcaattgtatgtggaaggtgaggaagaagatgaggtaattgtttttaag
ccatcggtggtagaaaagcatgtgaatggaagtgcttcaaacatgatgacctcagaaggt
catgattctggtgttagtgctgccagtgttcctcctggggttagcgtggcctctgttggt
ctaggaaatgaaatgggtccattttcagctgcacttgatggattgatcatgcagagtgca
ttacatgctagtgcaaggccaccctcaagtattgccaataacagtggccaatatatgcag
cctattcaaccaagtacttcattgtggtccgttgaacgagctgctgttatgaatggactt
gccagcttgaacatgataggaaatggtccaactgtaatatctgagttgcaagatcaagta
tttccacctgagccatattctgtcccttttccccagtctgtcaattttggcatgacaaat
aatattcgtgtgcatatcccagatgctgccataccatctaacttcagttcactttcatcc
tcagtagttggtattgatagcatgtcaattaagtccccatcagtcatgtcaacaggcata
aggaaaaatccagttagcagacctattaggcatctgggtccgcctccaggctttggttct
gttccttcgaaagtcctggaggagtcttcttcagcaatgaccataaagaatgaacatact
actcttcctcctatggatgactatagctggctggatggatatcagttgccttcatcacat
cagagcattggtttcaataactccattaatcattcaacacaaaactaccactcaatgagc
aagagtagtagctccgttgggatggtgagctttcctttccctgggaaacaggtaaactct
ctgcatgtgcaatcagggaaccagagaggttgggaggactaccagatatctgaacaatta
aaactgtaccaggggcaacctcagcaactccagagtggaaaccaacaatctgttgaactg
cctcagcggcatgaaggacagtctctgtgggaaggccatttttttgtgtga
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