KEGG   Nicotiana sylvestris (wood tobacco): 104222030
Entry
104222030         CDS       T05026                                 
Name
(RefSeq) THO complex subunit 1 isoform X1
  KO
K12878  THO complex subunit 1
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013  Nucleocytoplasmic transport
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104222030
  09122 Translation
   03013 Nucleocytoplasmic transport
    104222030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104222030
   03041 Spliceosome [BR:nsy03041]
    104222030
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     104222030
Spliceosome [BR:nsy03041]
 Complex C
  Other components
   EJC/TREX
    104222030
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104222030
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 104222030
NCBI-ProteinID: XP_009771507
UniProt: A0A1U7VUG1
LinkDB
Position
1:148983067..148999696
AA seq 609 aa
MDLFRQAILRPGTPEEFALRTVQEAIKPQKQIKLVQDENQLLENILRSLLQELVAAAVQS
GQKIMEYGMSIVDGESSQGQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCED
IFGYIESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYETQAPEGISIDFNFYKTLWSLQEYFCNPPSLINAPVKWHKFT
SGLMIVLNTFEAQPLSDEEGNAHNLEDDAATFNIKYLTSSKLMGLELKDPSFRRHVLVQS
LILFDYLKAPGKSEKELPSEAMKEEIKTSEERVKKLLEMTPPKGKDFLCSIEHILERERN
WVWWKRDGCAPFEKQPVEKKPVQGGTKKRRPRWRLGNKELSQLWKWADQYPNALTDTQRV
RTPSITDYWKPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSRFTEHGIEG
VVPLELLPAEVRARYQAKPSERTKRAKKEETKTSAQQAEENQIATAASEMDNEGGRADPE
ASVAPIDTDTRIATVTISQEETPTPEDNQKQSSDTDVAQEAGQMEADTEAETGMIDGETD
ADVDLDAVG
NT seq 1830 nt   +upstreamnt  +downstreamnt
atggatttgtttaggcaggctattctgcgcccagggactcctgaagagttcgcacttcga
actgttcaagaagcaataaaacctcagaagcaaataaagctagtccaagacgagaatcag
ctgctggagaatattctcaggtcgctacttcaagaactggtggctgctgcagttcagtcg
gggcagaagatcatggagtatggaatgtcgattgttgatggtgaatcaagtcagggtcag
attccccgccttcttgatattgttctatatctttgtgagaaagagcatgtggagggtggc
atgatatttcaacttttagaagatttgacagaaatgtcaacaatgagaaactgtgaggat
atctttgggtacatagagagcaaacaagacatattggggaagccagaactctttgcacga
gggaagcttgttatgttaaggacgtgtaatcagttgcttcgtcgtctatcaaaggctaat
gatgttgttttctgtgggcgcattatcatgtttcttgctcacttcttccccttatccgag
cgttcagctgtaaatataaagggagttttcaatacatcgaatgagacaaaatatgagaca
caagctcctgagggtatttctatagatttcaacttctataagacactttggagtttacag
gaatacttctgcaatccgccatccctgattaatgctcctgtcaagtggcataaatttaca
tccggtttgatgatcgtgctaaacacttttgaggctcagcctttaagcgatgaagagggc
aatgctcataaccttgaggatgatgctgcaacctttaacataaaatatcttaccagcagt
aaacttatgggtctcgagctgaaagatcctagtttcaggcgccacgttctggttcaaagt
ctcattctgtttgactatttgaaggctccgggaaaaagtgagaaggaattgccctctgaa
gcaatgaaggaggaaataaagactagtgaagagcgggtaaagaagcttcttgaaatgact
ccacccaaaggaaaagatttcctttgtagcattgagcacatattggagcgtgaaaggaat
tgggtttggtggaaacgtgatggctgcgctccatttgagaagcaaccggtagagaaaaag
ccggttcaaggtggaacaaaaaaacgtcggccacgatggaggctcggaaacaaagaactc
tctcaattgtggaaatgggcagatcagtatccgaatgctttaactgatactcaacgtgtg
cgcactccctctatcacagattactggaaacctctggcagaagatatggatgaatctgct
ggaatagaagcggaataccatcacaaaaataaccgggtctattgttggaaaggtttgcgg
ttttcagcccgccaagacttggagggattttccagatttacagagcacggtattgagggg
gttgtgcctctggaacttttgcctgctgaagtgcgggccagatatcaagctaagccaagt
gaaaggactaagcgagctaagaaggaggaaacaaaaacctcagcgcagcaagcagaagaa
aatcagatcgcgacagcagcaagtgagatggacaatgaaggggggcgagctgatcctgaa
gcatcagttgctccaattgacacagacacgagaattgctactgttaccatatctcaggaa
gaaactccaactccagaagataaccagaagcaaagctctgatacagatgttgctcaagaa
gcagggcagatggaagcagacacagaagcagagacggggatgattgatggagaaacagat
gcggatgttgatctagatgctgtaggctaa

DBGET integrated database retrieval system