Nicotiana sylvestris (wood tobacco): 104222030
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Entry
104222030 CDS
T05026
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104222030
09122 Translation
03013 Nucleocytoplasmic transport
104222030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104222030
03041 Spliceosome [BR:
nsy03041
]
104222030
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104222030
Spliceosome [BR:
nsy03041
]
Complex C
Other components
EJC/TREX
104222030
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104222030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
104222030
NCBI-ProteinID:
XP_009771507
UniProt:
A0A1U7VUG1
LinkDB
All DBs
Position
1:148983067..148999696
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AA seq
609 aa
AA seq
DB search
MDLFRQAILRPGTPEEFALRTVQEAIKPQKQIKLVQDENQLLENILRSLLQELVAAAVQS
GQKIMEYGMSIVDGESSQGQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCED
IFGYIESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYETQAPEGISIDFNFYKTLWSLQEYFCNPPSLINAPVKWHKFT
SGLMIVLNTFEAQPLSDEEGNAHNLEDDAATFNIKYLTSSKLMGLELKDPSFRRHVLVQS
LILFDYLKAPGKSEKELPSEAMKEEIKTSEERVKKLLEMTPPKGKDFLCSIEHILERERN
WVWWKRDGCAPFEKQPVEKKPVQGGTKKRRPRWRLGNKELSQLWKWADQYPNALTDTQRV
RTPSITDYWKPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSRFTEHGIEG
VVPLELLPAEVRARYQAKPSERTKRAKKEETKTSAQQAEENQIATAASEMDNEGGRADPE
ASVAPIDTDTRIATVTISQEETPTPEDNQKQSSDTDVAQEAGQMEADTEAETGMIDGETD
ADVDLDAVG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggatttgtttaggcaggctattctgcgcccagggactcctgaagagttcgcacttcga
actgttcaagaagcaataaaacctcagaagcaaataaagctagtccaagacgagaatcag
ctgctggagaatattctcaggtcgctacttcaagaactggtggctgctgcagttcagtcg
gggcagaagatcatggagtatggaatgtcgattgttgatggtgaatcaagtcagggtcag
attccccgccttcttgatattgttctatatctttgtgagaaagagcatgtggagggtggc
atgatatttcaacttttagaagatttgacagaaatgtcaacaatgagaaactgtgaggat
atctttgggtacatagagagcaaacaagacatattggggaagccagaactctttgcacga
gggaagcttgttatgttaaggacgtgtaatcagttgcttcgtcgtctatcaaaggctaat
gatgttgttttctgtgggcgcattatcatgtttcttgctcacttcttccccttatccgag
cgttcagctgtaaatataaagggagttttcaatacatcgaatgagacaaaatatgagaca
caagctcctgagggtatttctatagatttcaacttctataagacactttggagtttacag
gaatacttctgcaatccgccatccctgattaatgctcctgtcaagtggcataaatttaca
tccggtttgatgatcgtgctaaacacttttgaggctcagcctttaagcgatgaagagggc
aatgctcataaccttgaggatgatgctgcaacctttaacataaaatatcttaccagcagt
aaacttatgggtctcgagctgaaagatcctagtttcaggcgccacgttctggttcaaagt
ctcattctgtttgactatttgaaggctccgggaaaaagtgagaaggaattgccctctgaa
gcaatgaaggaggaaataaagactagtgaagagcgggtaaagaagcttcttgaaatgact
ccacccaaaggaaaagatttcctttgtagcattgagcacatattggagcgtgaaaggaat
tgggtttggtggaaacgtgatggctgcgctccatttgagaagcaaccggtagagaaaaag
ccggttcaaggtggaacaaaaaaacgtcggccacgatggaggctcggaaacaaagaactc
tctcaattgtggaaatgggcagatcagtatccgaatgctttaactgatactcaacgtgtg
cgcactccctctatcacagattactggaaacctctggcagaagatatggatgaatctgct
ggaatagaagcggaataccatcacaaaaataaccgggtctattgttggaaaggtttgcgg
ttttcagcccgccaagacttggagggattttccagatttacagagcacggtattgagggg
gttgtgcctctggaacttttgcctgctgaagtgcgggccagatatcaagctaagccaagt
gaaaggactaagcgagctaagaaggaggaaacaaaaacctcagcgcagcaagcagaagaa
aatcagatcgcgacagcagcaagtgagatggacaatgaaggggggcgagctgatcctgaa
gcatcagttgctccaattgacacagacacgagaattgctactgttaccatatctcaggaa
gaaactccaactccagaagataaccagaagcaaagctctgatacagatgttgctcaagaa
gcagggcagatggaagcagacacagaagcagagacggggatgattgatggagaaacagat
gcggatgttgatctagatgctgtaggctaa
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