Nicotiana sylvestris (wood tobacco): 104222647
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Entry
104222647 CDS
T05026
Name
(RefSeq) uncharacterized protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
nsy03015
mRNA surveillance pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104222647
09122 Translation
03013 Nucleocytoplasmic transport
104222647
03015 mRNA surveillance pathway
104222647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104222647
03041 Spliceosome [BR:
nsy03041
]
104222647
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104222647
Spliceosome [BR:
nsy03041
]
Complex C
Other components
EJC/TREX
104222647
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Hexapep_GlmU
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
104222647
NCBI-ProteinID:
XP_009772194
UniProt:
A0A1U7WC08
LinkDB
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Position
5:133567378..133572433
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AA seq
809 aa
AA seq
DB search
MSSPYPVIDNRPIDQLKVTELREELKRRKLPIKGLKQELVRRLAEAILQEQDAAHTKSEN
GGDSAPGPDEEMAESVDADNPKDNFDADNTTDKEADEKMSEVDAAENRVQLDEGKFLIEE
PVGGAISTMVEKDLVAQIADTETSAPTKEDQIAEVSVVQTSEPVSVSVESATALSGQDLQ
KYETQNGSGDLKEQLEYPISNSLLVEENVSLSILESQVSEISPVLGFQVNSDFVSTDVSI
DEKIELKDNVIANDVEVELDVKPEMVQLFSSSDVTDDAKSHTMDVEEPHDKKMSTEEPGN
KNDKYPEVSVVQTSDPVGVVVESDTALSGQDSQKYETQNESEDIKEQLENHISISSVDEA
KVSSSNLETQVSELSPVLGFQVKSDSVSADVSIDEKIELMDNVIADDVKIELDVKPDNVQ
LSSSSVDPGDGKSQPMDVEEPYDEKVSVEEPGNENDKYVDIMKTDGNGDSAEKLQLDRSP
GDDSTEEDVSEGKLGYFKLDSAKKIDGKKEIEVNTSTGVGSVASLDDARSVAHIDTNVED
NGPVVKSVKRKPHYQGTAAGSNDTVKRQRKWNSEDLKIPENKKGDAVASTTPKDFFQPSF
RRSVFRSDSVAKEEPPKERVVPPSSKVPTNSLLIENFLRPFTLKAVQELLSKTGTVTNFW
MDAIKTHCFVSFASVEEAVETRNAVYNLQWPPHGGKLLVAEFVDPQGVKDKVEAPSQSPS
THATPVTTIPAAAPPSAQPQPSPRQQMQNKQLQSEKLPPPPLPEKLDPPIVTLDDLFRKT
KATPRIYYLPLSDEQVAEKLKAQGKIIKQ
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaccgtatcctgttattgataatcgaccaattgatcagttgaaggtcacagag
ctaagagaagagcttaagagacgtaagctacccataaaggggttgaagcaagagttggta
aggcgattagcagaagcaatcctccaagagcaggatgctgctcatactaagtcagagaat
ggtggtgattccgcgcctgggccagacgaagaaatggctgaatctgttgatgcagataat
cctaaggataattttgatgctgataatacgacagataaggaagcggatgagaaaatgagc
gaggttgatgcagctgaaaacagagtgcaattggatgaagggaaattcttaattgaggag
ccggttggtggtgctatttctactatggttgaaaaggatctggtagcccaaattgcggat
acggaaaccagtgctccaaccaaagaggaccagatagctgaagttagtgttgtgcaaacc
agtgaacctgtcagtgtgagtgttgagtctgccacagctttaagtggacaagacttgcaa
aaatatgaaacccagaatgggagtggggatttaaaagagcagctggagtatcccatttca
aattctttactagtggaggaaaatgtcagtttatccattctggaaagtcaggtatctgag
atcagccctgttttagggttccaagtaaactctgattttgtttccactgatgtctcaatt
gatgaaaaaatagaactgaaggataatgtaatagctaatgatgtcgaagtagaattagat
gttaaacctgagatggtgcagctattctcgagcagtgatgtcactgatgatgcaaaatca
catactatggatgttgaagaaccacatgacaagaaaatgtctacagaagaaccaggcaac
aaaaacgataaatatcctgaagttagtgttgtgcaaaccagtgatcctgttggtgtggtt
gtagaatctgacacggctttaagtggacaagactcgcaaaaatatgaaacccagaatgag
agtgaggatataaaagagcagctggagaatcacatttcaatttcttctgtggatgaggca
aaggtcagttcatccaatctggaaactcaagtatctgagctcagccctgtgttagggttt
caagtaaaatctgattctgtttccgctgatgtctcaattgatgaaaaaatagaactgatg
gataacgtaatcgctgatgatgtcaaaatagaattagatgttaaacctgataacgtgcag
ctatcatcaagcagtgttgaccctggtgatggaaaatcacaacctatggatgttgaagag
ccatatgacgagaaagtatctgtagaagaaccaggcaacgaaaacgataaatatgttgat
ataatgaagactgatggcaatggggattctgcagagaagttgcaattagaccgaagtcct
ggtgatgattccactgaggaggatgtttcagagggtaaattaggttattttaagttggac
tcggcgaaaaaaatagatggaaagaaagaaattgaagtgaacacgagtacgggggtagga
tctgttgcttctctggatgatgctaggtcagttgcccatatagataccaatgttgaagac
aatggtcccgttgtgaagtctgtgaaaagaaaacctcattatcaaggaacagcagcgggg
agcaatgatactgtaaagaggcagcgtaaatggaattcagaagatcttaaaattcctgag
aacaagaaaggtgatgctgtggcctcaactacccccaaggattttttccagccctctttc
agacgtagtgtctttagatctgattcagtggcaaaggaggaaccaccaaaagaacgtgtg
gttcctccatcatcgaaagtgcctactaattctctcttgatcgagaattttctgcggcct
ttcaccttgaaagcggtgcaagagctacttagcaagacgggcacagtgacaaatttctgg
atggacgctattaagacccactgctttgtttcttttgcatctgtagaagaagctgtagaa
actcggaatgctgtatataacctgcaatggcctccacatggaggaaagctacttgttgct
gagtttgttgatccccagggggtgaaagataaggttgaagcaccatctcaatctccctca
actcatgcaactcctgtgaccacaatcccggctgcggccccaccttctgcccagccccaa
ccatcaccaaggcaacagatgcagaacaagcaacttcaatctgagaaacttccaccacct
ccacttcctgagaaactcgaccctccaattgtcactctggatgatctttttagaaagaca
aaggcaacacctcgcatttactatttgcctttgtctgatgagcaagttgcagaaaaattg
aaggcacaagggaagattatcaagcagtag
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