KEGG   Nicotiana sylvestris (wood tobacco): 104222735
Entry
104222735         CDS       T05026                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104222735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104222735
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     104222735
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     104222735
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 104222735
NCBI-ProteinID: XP_009772319
UniProt: A0A1U7WCE1
LinkDB
Position
1:154947128..154951564
AA seq 241 aa
MEYVNPEGLRLDGRRPMEMRQIRAEIGVVSRADGSASFEMGNTKVIAAVYGPREVQNRSQ
QINDQALVRCEYSMANFSTGDRRRKNKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYLEDSAGGPD
VTVGILPKLDKVTLLQMDAKLPIDTFETVMQLAVEGCKAVESYIREILLENTKKLEIRRG
A
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagtacgttaatccggaaggtcttcgcttagatggtcgccgtcccatggagatgaga
caaattcgtgctgaaataggggttgtctcaagagctgatggctctgcttcttttgaaatg
ggtaataccaaagtcattgctgcagtttatggtcctagggaggtccagaacaggagccaa
cagatcaatgaccaggcgctggtacgatgcgaatatagcatggctaatttcagcactggt
gatcgccgaagaaaaaataagggtgacaggagatccacagagatatctcttgttattcgc
cagacaatggaagcttgcatattgacacacttaatgcctcgatctcagatagacattttt
gtccaagttctccaagcagatggaggtacaagatcagcatgcataaatgctgccacgctg
gcactagctgatgctgggattcccatgcgtgatcttgtcacatcgtgcagtgctggatac
ctgaacagcacgcctcttcttgatctaaactacttggaagacagtgctggaggccctgat
gtcaccgtaggaattttacctaagttggacaaagtgacccttctgcagatggatgctaaa
ctacccatagatacttttgaaactgtcatgcaattagcagttgaaggctgcaaagcagtg
gaaagctatatccgggaaatattattggaaaacaccaagaagttggagattcgccgaggt
gcatag

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