Nicotiana sylvestris (wood tobacco): 104224009
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Entry
104224009 CDS
T05026
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104224009
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104224009
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
104224009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
AAA_19
DEXQc_Suv3
T2SSE
Helicase_PWI
Motif
Other DBs
NCBI-GeneID:
104224009
NCBI-ProteinID:
XP_070003880
LinkDB
All DBs
Position
6:complement(195835606..195894176)
Genome browser
AA seq
2087 aa
AA seq
DB search
MLFQLPRLTNALREPFDVDQAYLHRKAILQNLNSRSTATSLEESKLARKIVYQWDQASPE
LRQAYKQFVGAVVELMKGEVVSEEFREVAFNVYRLFTGTVVEDEEHRSIAEKKLDLQKLV
GYAVSDSLLSRVASLAQRLYELQNYHPGNETVSLQEMSNGTTDEVEFGSDLVFRPPARFL
IDVSLEDSDFLVEQDDAPSSSHESQYDHGSSNFRESVSGVNFDLSWLRDACDKIVRGNTS
QLPRDELAMAICRVLDSEKPGDEIAGDLLDLVGDGAFETVQDLIMHRKEIVDAVHHGLHA
LKADKMSPGGQSRTPSYAVQVTVQTESERQIDKLRRKEERKHRRGTNNGVEDDLSAVSFS
SLLHASEKKNIFEDLIGHGEGPNTLGPTALPQGTIRKHYKGYEEVIIPPTPTASMKPGER
LIEIKELDDFAQTAFHGYKSLNRIQSRIYHTTYNSNENILVCAPTGAGKTNIAMIAILHE
IKNHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNVTVRELTGDMQLSKNELE
ETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVES
TQSMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEHNFLARN
ELLNEICYNKVVDSLKQGHQAMVFVHSRKDTVKTADKLVELAGKSAESELFTNDEHPQYE
ILKREVFKSRNKEVVQLFEHGIGIHHAGMLRADRNLTERLFSQGLLKVLVCTATLAWGVN
LPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYL
RLLTSQLPIESQFINSLKDNLNAEVVLGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGW
DEVMADPSLSLKQRDFISDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYTSVET
YNEMLTRHMNESELISMVAHSSEFENIVVRDEEQNELEMLARTYCQLEVKGGPSNKYGKV
SILIQLYISRGSIDTFSLISDAAYISASLARIMRALFEICLRRGWCEMSALMLDYCKAVD
RQIWPHLHPLRQFDRDISSEILRKLEERGADLDRLQEMQEKDIGALIRYAPGGKVVKQFL
GYFPLVQLSATVSPITRTVLKVDLVVAPQFVWKDRFHGTALRWWILVEDSENDHIYHSEL
FTLTKKMARAEPHKLSFTVPIFEPHPPQYYIRAVSDSWLHADALYIINLHKLALPEVQTS
HTELLDLKPLPVTALGNGTFEALYKFSHFNPIQTQAFHVLYHTDKNILLGAPTGSGKTIS
AELAMLHLFNTQPDMKVIYIAPLKAIVRERMTDWRKRLVSQLGKKMVEMTGDYTPDLMAL
LSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISS
QTERSVRFVGLSTALANAHNLADWLGVDENGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM
NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFINMPEDALQM
VLSQVTDQNLKHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAH
LVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLY
EPFPVESSLREQLHDHINAEIVTGTICHKEDAVHYLTWTYLFRRLMVNPAYYGLEVAEPG
ILNSYLSSLVQSTFEDLEDSGCIKITDDSVEPLMLGSIASQYYLKYTTVSMFGSKIGPDT
SLEVFLQILSGASEYDELPVRHNEENYNEKLSEKVPYAVDHSRLDDPHVKANLLFQAHFS
QSELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFDRDS
PFWMLPCMTDDLVSLLHKKGIASIQQLLDCPSKSLPAITGSSAASRLYQDMQHFPRIQVR
LKIQKKESNGGKIFTLNIRLEDANTQRRTAKAFTPRYPKVKDEAWWLVLCNTSASELYAL
KRMSFSGRLQTNMDLPSVLTNFQGIKLILVSDCYLGFEQEYSIEGLA
NT seq
6264 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttcaactgcctcgcctgaccaatgctctcagagaaccattcgacgtcgatcaa
gcttaccttcaccggaaagcaattctccaaaatctcaactctcgcagtactgcaacttca
cttgaagaatcaaaacttgctcgaaagattgtatatcaatgggaccaagcttctcctgag
ttgcggcaagcgtacaagcagtttgttggggcagtggttgagttgatgaagggtgaggtt
gtgtcagaggagtttagggaggtggcattcaatgtttataggcttttcaccgggacagtg
gtggaggatgaggaacacaggagtattgctgagaagaagctagatttgcaaaaactcgtg
ggctatgcagtttcggactcattactatcgagagttgcttccttagcacaaagattgtac
gaattgcagaattatcaccctggaaatgagacagtctctttacaagaaatgtctaatgga
accactgatgaagtggaatttggctcggaccttgtctttagacctcccgcgcgattctta
attgatgtttctttggaagattctgattttcttgttgagcaggatgatgcaccttcttca
agtcatgaatcacagtacgatcatggctcctcaaattttagagaatctgtatctggtgta
aattttgatttaagctggttaagagatgcctgtgataagatagttagaggtaatacttcg
cagcttcctcgagatgaactggcaatggccatatgccgcgtacttgattctgagaaacca
ggtgatgagatagctggcgatttgcttgaccttgttggtgatggtgcatttgaaacagtt
caggatcttatcatgcacagaaaggaaattgttgatgcagtccatcatggactacatgca
ctaaaagctgacaagatgtctccagggggacaatcacgcacacctagttatgctgttcag
gtaactgttcaaactgagtctgagcggcaaattgacaaacttcgtcggaaggaagaaaga
aagcatagacgaggaacaaataatggggttgaggatgatttgtctgccgtgagttttagt
tctttacttcatgcaagtgagaagaaaaacatatttgaggacctcattggtcatggtgaa
gggccaaacaccttaggtcctacagcccttcctcaaggaactatcagaaagcactacaaa
ggatatgaagaagtcattatccctccaacaccaactgcatctatgaaacctggggagaga
ctgattgagataaaggagctagacgattttgcacaaacagctttccatggctacaagagt
cttaaccgtattcagagcagaatttaccatactacttataatagcaacgaaaacatacta
gtatgtgctcccactggggctgggaaaacaaacatagctatgattgctattctacatgag
attaaaaatcactttagagatggttacttgcataaggatgaattcaagatagtctatgtt
gctcctatgaaggcattagctgcagaggtcacatcaactttcagtcaccggttgtctcca
cttaatgtaactgtgagagaacttactggagacatgcagctttctaagaatgagcttgag
gaaacacagatgatagtgacaacgcctgaaaagtgggatgttattactcgtaaaagcagt
gacatgtcactctcaatgctggtgaagctacttatcattgatgaagtccatttgctaaat
gatgatagaggccctgtaatagaagcattagtagcccgtacacttcgtcaggtggagtct
acacagtctatgataaggatagtgggcctttcagccactttacccaactatttggaggtt
gcacagtttctaagggtgaatccggatacaggtttatttttctttgattcaagctaccgt
ccggtacctcttgcacaacagtatattggtattagtgagcataattttttagcccgcaat
gaacttcttaatgagatatgctacaataaggttgttgattccttaaaacaagggcatcag
gctatggtatttgtccattcacgtaaggacacggtgaaaacggctgataagttggttgag
ttggctggtaaaagtgcagagtctgagctgttcacaaatgatgagcatcctcaatatgag
attttaaagagggaagttttcaagtccagaaataaggaggttgtccaactgtttgaacat
gggattggtattcatcatgctggaatgttacgtgctgacagaaacctaacagaaagactt
ttctctcagggacttttgaaggtccttgtttgcacagcaactttggcatggggagtcaat
ttgcctgctcacacagttgtgattaagggaactcaaatatatgatccaaaggctggtgga
tggcgagatctgggtatgctagatgttatgcaaatcttcggacgtgctggaagacctcaa
tttgataaaagtggtgaaggcattataatcacttcacatgacaagttggcctattattta
cgtctattgacaagtcaacttcctatagaaagtcagtttatcaattccttgaaagataat
ctaaatgctgaggtggtactgggtactgtaacaaatgttaaggaagcttgtgcttggctt
ggttacacttatcttttcattaggatgaagatgaatcctttggcctatggcataggatgg
gatgaggtcatggcagatccatcattaagcttaaagcaaagagattttataagtgatgct
gctcgtgctcttgacaaagcaaaaatgatgcgttttgatgagaaaagtgggaacttttat
tgcactgagcttggtcgtattgcaagccacttttatatccagtatactagtgttgaaact
tacaatgaaatgttgacacgccatatgaatgaaagtgagttgataagtatggtagctcat
tcttcggaatttgaaaatattgtggtccgagatgaggaacaaaatgagcttgagatgttg
gctcgcacatattgtcaattggaagtcaagggtggtccatctaacaaatatggaaaagtt
tcaattcttattcagctgtacatctctcgaggatcaattgacacgttttcactaatctct
gatgcggcttatataagtgcaagcttggctcgtatcatgcgggctctttttgagatttgc
ctccgtagaggatggtgtgagatgtctgctctcatgttagactactgcaaggctgtggat
cgccaaatatggccccatctacatcctcttagacagtttgacagagatatttcatcagaa
atattgaggaagcttgaagaaaggggagctgatttggatcgtttacaagagatgcaagag
aaagatattggagctttgattcgttatgcacctggaggaaaggttgttaagcaatttctg
ggatatttcccattagtccagttgtctgctacagtcagtccaatcactagaacagttctg
aaggtggatttggttgtagctccacagtttgtttggaaggatcgatttcatggcactgca
ctgcgctggtggattttggttgaggattctgagaatgaccacatttaccattccgagctc
ttcaccctcacaaagaagatggccagagcggaaccacataaactatcttttactgtgcca
atctttgagccacatcctccgcagtactacattcgtgctgtttctgactcatggctacat
gcagacgctttgtacatcataaatctccacaaacttgctcttccggaggtccaaacatcc
cacactgaacttctagatttgaaaccccttcctgtgactgcacttggcaatggaactttt
gaggccttgtataaattttctcacttcaatcctatacaaacacaggcttttcatgtgctg
tatcacaccgacaaaaatatcctcttaggagctccgactggaagtgggaagactatatca
gctgagcttgctatgctccatttattcaatacacagcctgatatgaaggttatctatata
gcacctttaaaggctattgttcgtgagagaatgacggactggagaaagcgtcttgtttcc
caacttggaaagaagatggttgaaatgactggtgactacaccccggatctaatggctctc
ttgtcagcagacatcattatctccactcctgaaaagtgggacggtatcagtcgtaattgg
cacagtcgaagctatgtcactaaggttgggcttatgattttggatgagattcatttactt
ggagctgatcgaggacccatacttgaggttattgtctcaaggatgagatacatatcttct
caaacagagcgctcagttcggtttgttggcctgtcaacagcattagcgaatgcacataat
ttggctgattggttgggtgttgatgaaaatggtctcttcaatttcaagccaagtgtgagg
cccgttcctcttgaagttcatattcagggatatcctgggaagttctactgcccgaggatg
aatagtatgaacaagcccgcatatgctgctatatgtacccattcaccaacaaaaccagtt
ctaatctttgtctcatctcgtcgccaaacaaggcttacggcactggaccttattcagttt
gcagcttcagatgagcacccgaggcagttcataaacatgccagaagatgcacttcagatg
gttctttctcaagtcacagaccagaacttgaagcacaccttacaatttggaattggattg
caccatgctggactgaatgataaagacagatcattggtcgaggaattatttgcaaacaac
aagattcaggtgttggtctgtacaagtacgttagcatggggtgtaaaccttcctgcacat
ttggttattattaagggaacagagtactatgatgggaaggcaaaaagatatgttgatttc
ccaatcactgatatattacaaatgatgggtcgagcgggtcgtccacaatatgatcaacat
ggaaaagctgttattcttgttcatgaacccaagaagagcttctataaaaagtttctgtat
gaaccattcccagttgaaagtagcctgagagagcaattgcatgaccacatcaatgctgag
atcgttacgggaacaatctgtcataaagaggatgcagtgcattatctcacttggacctac
ttattccgtagattgatggttaacccagcttattatggcttagaggttgcagaacctggg
attctaaattcttatttgtctagcttggtgcaaagcacatttgaggatctagaagatagt
ggatgcatcaagattactgacgatagtgtcgaaccactgatgttgggctcaatagcatct
caatattatctcaagtacaccactgtatcaatgtttggctcaaaaataggacctgataca
tctctcgaggttttcctacaaatactatctggtgcttcagaatacgatgagctccccgtg
aggcataatgaggaaaactacaatgaaaaattatcagagaaagttccatatgctgtcgac
cacagtcgcctagatgaccctcatgtgaaagcaaatttgctctttcaggctcatttttcc
caatcagagctaccaatcagcgattatgtcacagacttgaagtctgtgctggatcaaagt
atacgtgttattcaggccatgatagatatttgtgctaatagtggatggctgtcaagtacc
attacctgtatgcatctgttgcaaatggtcatgcagggattgtggtttgacagggactct
cctttttggatgttaccatgcatgactgatgatctagtcagcttattgcataaaaaaggt
attgctagtatccagcagctgttggattgtccttcaaaatctttgccagctatcactggg
agttcagctgcctcgagactctatcaggatatgcagcacttccctcggattcaagttcga
ctaaagattcagaagaaggaatctaatggtggcaagatttttaccttgaacattagattg
gaagatgcgaacactcagcgaagaacagcaaaagcttttaccccacgatatccaaaggta
aaagatgaagcttggtggttagtcctttgtaatacttcggcaagtgaactgtatgctctg
aagagaatgtctttctctggtcgtttgcagacaaacatggatttgccatccgttctgacc
aatttccaggggataaagctcattctagtatcggattgttatcttgggtttgagcaagaa
tactcgatcgaaggattggcataa
DBGET
integrated database retrieval system
