Nicotiana sylvestris (wood tobacco): 104224037
Help
Entry
104224037 CDS
T05026
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03030
DNA replication
nsy03420
Nucleotide excision repair
nsy03430
Mismatch repair
nsy03440
Homologous recombination
nsy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104224037
03420 Nucleotide excision repair
104224037
03430 Mismatch repair
104224037
03440 Homologous recombination
104224037
03460 Fanconi anemia pathway
104224037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nsy03000
]
104224037
03032 DNA replication proteins [BR:
nsy03032
]
104224037
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104224037
Transcription factors [BR:
nsy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104224037
DNA replication proteins [BR:
nsy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104224037
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104224037
MMR (mismatch excision repair)
104224037
DSBR (double strand breaks repair)
HR (homologous recombination)
104224037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
PGAP1_3rd
Motif
Other DBs
NCBI-GeneID:
104224037
NCBI-ProteinID:
XP_009773896
UniProt:
A0A1U7W9K8
LinkDB
All DBs
Position
3:219320811..219324319
Genome browser
AA seq
617 aa
AA seq
DB search
MAKMVSPDAVSTILANPSPDSSSDLPEIIVQVVDLKPTGNRYMFSASDGKMKIKGILQSS
LSSEVISGSIQNLGLIRILDYTLNDIPTKNEKYLIVTKCEAVSPALEAEYKAEVKTQENV
QENFKNDVKMEETGIVLKPKQEFQTKSAAQIVHEQHGNMAPAARMAMTRRIQPLVSLNPY
QGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFFDKFELG
KVYYISKGTLRVANKQFKTVQNDYEMTLNENSQVEEASNEEAFIPDTKFNFVPIDELGPY
VNGRELVDVIGVVQSVSPTMSIRRKSNNETVPKRDITIADATKKTVVVSLWNDLATNVGQ
ELLDMSDKSPVVAIKSLKVGDFQGVSLSALSKSNIVVNPDLPEAKKLRSWYDSEGKETSL
ASIGSGMSPSTKNGARSMYSDRVSLLHITSNPSLGEEKPVFFSIKAYISFIKPDQTMWYR
ACKMCNKKVTDAFGSGYWCEGCQKNDAECSLRYIMALKVSDASGEAWLSAFNEQAEKILG
YSADELDKLKSEEGETVYQMKLKEATWVPHLFRVSVAPQEYNSEKRQRITVRAVAPVDYA
AESKYLLEEMSKMNISI
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaatggtgagcccagatgccgtttcgactattttagctaacccatcacctgat
tcttcttcagatcttcctgaaattatcgttcaggttgtggatctcaagcccaccggcaac
agatacatgttttcagccagtgatggaaaaatgaaaatcaagggtattttgcaatccagt
ctgtcatctgaagttatatctggatccatacagaatctgggtcttattcggattcttgat
tacactctcaatgacattccaaccaagaatgagaagtacttgattgtaacaaaatgcgag
gcagtatcgcctgcacttgaagcagaatataaggctgaagtgaagacccaagaaaatgta
caggagaatttcaagaacgatgtaaaaatggaagaaactgggattgttttgaaacccaaa
caggaatttcaaactaaatctgctgctcaaattgtacatgaacaacatggaaacatggca
ccagctgcacgaatggcgatgacaagaagaattcagccgcttgtttccttgaatccttac
caaggaaactggaccattaaagttcgagtaactagcaagggaaatatgcggacttacaaa
aatgctagaggagaaggttgcgtgttcaatgttgaattaacagatgaggatggtacacaa
atacaagctacaatgtttaatgaagctgcaagaaagttttttgacaaatttgaattgggg
aaagtctattatatatcaaagggaacacttagggttgctaacaagcagttcaagactgta
caaaatgattatgagatgactttgaatgaaaattctcaagttgaggaggctagcaatgaa
gaagcttttattccagacacaaaatttaactttgtccctattgatgaattgggaccatat
gtcaatggcagagagcttgttgatgtaattggagtggttcagagtgtatctcctacaatg
agcataaggaggaagagtaacaatgagacagttccaaagcgtgacataactattgcagat
gcgacgaagaagactgttgtggtatctctttggaatgatctagctaccaatgttggacaa
gaactactagacatgtctgataaatccccagtagttgcaatcaaatcccttaaagttgga
gactttcagggggtgtctttatctgcgttaagcaaaagtaatattgttgtgaatccagat
ttacctgaagccaaaaaattgagatcttggtatgactctgaaggtaaagaaacttcattg
gcatctattggttctggtatgagtccctcaaccaagaatggagcacgatctatgtactct
gatagagtctctttgctccacataactagtaacccatcccttggtgaggagaagcctgtg
ttcttcagcataaaggcatatataagtttcattaagcctgatcagaccatgtggtatcgg
gcatgtaagatgtgtaacaagaaagttactgatgcttttgggtctggttattggtgtgaa
ggatgccaaaagaatgatgcagagtgtagtttgagatatataatggcattgaaagtttct
gatgctagtggtgaagcttggctctctgcattcaacgagcaagcagagaaaatacttgga
tattctgctgatgaacttgacaagcttaaatctgaggagggagaaactgtttatcaaatg
aaattgaaggaagctacatgggttcctcaccttttccgggtcagtgttgcaccacaagag
tataacagtgagaaaaggcaaaggataacagtcagggctgttgctccagttgattatgct
gcagaatccaaatacttgttggaagaaatgtcaaagatgaatatttccatataa
DBGET
integrated database retrieval system
