KEGG   Nicotiana sylvestris (wood tobacco): 104224160
Entry
104224160         CDS       T05026                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018  RNA degradation
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104224160
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104224160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104224160
   03041 Spliceosome [BR:nsy03041]
    104224160
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104224160
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104224160
Spliceosome [BR:nsy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104224160
SSDB
Motif
Pfam: LSM Hfq DUF150_C SM-ATX
Other DBs
NCBI-GeneID: 104224160
NCBI-ProteinID: XP_009774049
UniProt: A0A1U7WHD6
LinkDB
Position
9:complement(24053424..24060940)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVEGTLKGYDQLLNLVLDEAKEYLRDADDPLKT
TEQTRALGLIVCRGTAVMLVAPTDGTDEISNPFVQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtctggcagaaaagaaactgttttagatttggcaaaatttgttgacaagggtgtgcag
gtcaagcttacaggtggtagacaagtggaaggaacacttaaaggctatgatcagctgcta
aatcttgtcttggatgaagccaaggagtaccttagagatgctgatgatcccctgaagact
accgagcagacacgagctcttggcttaatagtctgcaggggtacggcagtaatgctcgtg
gctccaactgatggtacagatgagatttccaatccttttgtccagccagatggggcatag

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