Nicotiana sylvestris (wood tobacco): 104225116
Help
Entry
104225116 CDS
T05026
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03015
mRNA surveillance pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104225116
09123 Folding, sorting and degradation
03018 RNA degradation
104225116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104225116
03041 Spliceosome [BR:
nsy03041
]
104225116
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104225116
mRNA cycle factors
Stress granule specific factors
104225116
Spliceosome [BR:
nsy03041
]
Complex C
Other components
Complex C specific factors
104225116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_7
RRM_RdRP1_2
RRM_MARF1
HPS3_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
104225116
NCBI-ProteinID:
XP_009775186
UniProt:
A0A1U7WD66
LinkDB
All DBs
Position
4:158489760..158494405
Genome browser
AA seq
662 aa
AA seq
DB search
MALQVQQQTPVAGQNGVAATAGGGGAVGSPPPVVGNSQVVVSTSLYVGDLDFNVNDSQLY
DLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPTDAARAMEVLNFTPINGKSIRIMYSH
RDPSIRKSGAANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQFDS
EGAATSAIAKLNGMLINDKQVYVGHFLRKQERDSAVSKTKFNNVYVKNLAESTTDEELKN
TFGEFGNITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKFDDKEWYVGKAQKK
SEREQELKSKFEQTAKEVVDKYKGVNLYIKNLDDTIDDDKLKELFSEFGTVTSCKVMRDP
SGISRGSGFVAFSTPEEASKALSEMNGKMIVSKPLYVAFAQRKEERRARLQAQFSQLRPV
AMAASMAPRMPMYPPGAPGMGQQLFYGQAPPGMIPPQAGFGYQQQLVPGMRPGGAPLPNF
FMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPMMQQQMLPRGRMYRYPPGRNGQEAPIPGL
AGGMLSVPYDMGGMLPREAAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHE
HAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAMEVLKNVQQANSPADQLASLSLNDNL
VS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcgctacaagtgcagcaacagactccggtggcgggtcaaaatggtgtggcggctacg
gctggtggtggcggcgccgtgggttcaccgccgccggtggtaggaaacagccaggttgtt
gtgtcgacgtcactgtacgtgggtgaccttgattttaacgtgaatgattcgcagctatat
gatctgtttaaccaggttggtcaggtagtatcagttagggtttgtagggacttgagtact
aggcgatcccttggttatggctacgtgaactacagcaacccgacagatgccgccagggca
atggaggtgttgaacttcactcctattaatgggaagtccattaggataatgtattctcat
agagaccccagtatccgtaagagtggagcagctaatatttttattaagaatttggacaag
tctattgacaacaaagctttgcatgacactttttcaagctttgggaacattctttcttgc
aagatagctactgattctaatggccagtctaaaggctatggttttgtacaatttgacagt
gaaggggctgctacaagtgcaatagctaagttgaatggcatgcttatcaatgataagcag
gtgtatgttgggcattttcttcgtaaacaagaaagagattctgcagttagcaagactaaa
ttcaataacgtctatgtgaaaaatttggcagagtccacaacagatgaggaactgaaaaat
acttttggtgagtttggtaatattactagtgcagtagtgatgagggatgctgacggaaaa
tccaagtgctttgggtttgtcaattttgaaagtgctgatgatgctgctaaggctgttgaa
gctttgaacgggaagaaatttgatgataaagagtggtatgttgggaaagctcagaagaag
tctgaaagggaacaagaactgaaaagcaagtttgagcagacagctaaggaggtagtagat
aaatacaaaggagttaacctgtacattaaaaatttggatgataccattgacgatgataaa
ctcaaggaacttttttcagagtttggcacagttacttcttgcaaggttatgcgagatcct
agtggaatcagcagaggatctggatttgttgctttctcaactccagaagaagcttccaaa
gctctttctgagatgaacgggaaaatgatagttagcaagccactctacgttgcatttgct
cagcgcaaagaggagagaagagctaggttgcaggcacaattttcacaactgcgaccagtt
gcaatggctgcatctatggctcctcgtatgccaatgtatcctcctggtgctcctggtatg
ggacagcaactattttatgggcaggctcctcctggtatgataccaccccaggctggtttt
ggctatcaacagcagcttgttcctggaatgcggcctggaggagctcctttgcccaacttc
tttatgccattagtccagcagggtcagcaaggccagcgaccgggtggtcgacgtggtgca
gggcctgtgcaacaaactcagcagcccatgcccatgatgcagcagcagatgctcccaagg
ggaagaatgtatcggtatccacctggtcgtaatgggcaggaggcgccaataccaggcctg
gcagggggtatgctttctgttccatatgacatgggtggcatgctgcctcgagaagctgct
atgggacagcctatgccaatttcaacattggcttctgccctcgcaaatgcaccacctgaa
cagcagaggacgatgttgggtgaaagtctgtacccacttgttgatcagctggagcacgag
catgcagcaaaggtgacgggcatgcttcttgagatggatcaaactgaggttttgcatctg
cttgaatcaccagaggcgttgaaggccaaagttaatgaggctatggaagttttgaagaat
gttcagcaggctaatagccctgctgaccaactagcctctctctccctcaatgacaacctt
gtgtcttga
DBGET
integrated database retrieval system
