Nicotiana sylvestris (wood tobacco): 104226614
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Entry
104226614 CDS
T05026
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104226614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104226614
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104226614
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104226614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
104226614
NCBI-ProteinID:
XP_009776944
UniProt:
A0A1U7WQH5
LinkDB
All DBs
Position
1:106339769..106372664
Genome browser
AA seq
2418 aa
AA seq
DB search
MIPFTSTVSTQIRFLLNSLNASNSDTVFHELRQYLAYGVEGSILLLQTCVDQLNIYGKDL
KNTQLDPVFASIFRCILDKPSFSTAFSESLKDTAISEEFLVNLSTVLQLTISEKIGVGLA
LSDSENVDVRKCGTNYCMGQIAELCSTNSSLDDVMPIQSVLLFLDQSEGLSKHVDLFMHM
LSLIQSKEEAQFILTPLLSDELREANFLRNLDFLNDGGEDDFDALVAEMEKEMSIADIMK
ELGYGCTANVLQCKEMLSLFLPLTEVTVARILGMVVHTRSGIEDNQNVFSTFRAALGSST
VSDPSPLDSWNADVLIDAIKQLAPGLNWVTVMENLDHEGFYIPDGTAFSFLMSIYKHACQ
DPFPLGAICGSLWKNAEGQLSLLKYAVSVPPEVFTFAHCGRQLAYVDAVNDHKIQIGHAN
HAWLCLDLLEVLCQLAERGYASSVRSILEHPLKHCPEVLLLGMAHINTAYNLLQHEVSAA
VFPVMLKNTGANGMILHLWHVNPSILLRGLVDTLNVDLENTYKVLDTCQEQKILSSVLDM
IPYAFGIRLAALASRKELVDLEKWLSNNLSTFKDIFYEECLKFLREVHLAAQDVASNRFD
PPNALWTIYSETSSTFLKVLKSHSGLVSSRHLSEELDKLHITYMDANSRLKSVGGADSST
SDGSDDIEAEANIYFHQMFSGQLTNDATVQMLARFKESTEKREQAIFECMIANLFEEYKF
FSKYPERQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGIMALEQF
VDRLIEWPQYCNHILQISHLRATHSELVAFIERALARISLAHSESEVAHSPAADQFHGPI
TSSPMNAEGSTFPVVGQGSLQQSMQGSSSNQLPQRQQSSLDERKPSAVLSSYLKPALSSA
VQPAAVPSSDTAGIQKPQGSVSASAVLTSSPGFLRPSRAITSARFGSALNIETLVAAAER
RETPIEAPASEIQDKISFIINNLSAANIEAKAKEFTGILEEQYYPWFAQYMVMKRASIEP
NFHDLYLKFLDKVTSKALYKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKIT
IGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGL
LAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVVPTSLLKDRVREVEGNPDFSNKDVGSSQ
PPIVGDVKSGIISSLNQVELPLEVPSPSHPSGPSRILTQYAAPLHIPSAPMTEDEKLAVL
GLSDQLPSAQGLLQGQSPFSVSQLPAPASNIEQQFVVNPKLHALGLQLHFQSVLPIAMDR
AIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRICNAAHLMVASLSGSLAHVTCKE
PLRGSISGQLRTLLQGLGIASELLEQAVQLVTNDNLDLGCAMIEQAATDKAIQTIDGEIA
QQLAIRRKHREGVGPTFFDASLYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQN
QSSQSPNAVPAGPSTSSGSGGVSRAYMAGSGQMNPSLYSSGVVNAGISAVPQPLEISDEI
DTSSQLNSASSPHLGMGDSAASNNFETEAIAEPFTSVSAPELHPLEPSNIAKDSGASLQP
SNATAASERVGNSISEPLLTTGDALDKYQIISEKLESLVSEEAKEAEIQALIAEVPAVIL
KCISRDEAALAVAQKAFKGLYENASNSAHVGAHLAILASIRDVSKLFVKELTSWVIYSEE
ERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAISLIQALVISDSRVISE
LQNLVEVLAKIAARPGSPESLQQLVEIAKNPAAANAATLSSVTFGKEDSNKQSRDKKIAG
PATGTREDYGVSESVEPDPAGFREQVSMLFAEWYRICEIPGANDATHAHYILQLHQSGLL
KGDETSDRFFRRLTELSVSHCLSSEVMSSTPQSHQAQPLSFLAIDIYAKLVFSILKFYPV
DQGSSKLLLLPKVLAVTVKFIQKDAEEKKMTFNPRPYFRLFINWLLDLCSLDPVFDGANF
QVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQF
MEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQIKGDVDEYLKTRQQGSPF
LSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAV
FLVGAALDIFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCG
GPKPVDESVVSGGIPDIH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttcacctccactgtttctacacagattcggtttctgctcaatagcttgaac
gcttccaattctgacactgttttccatgagctccgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcagacgtgcgttgatcaactgaatatttatgggaaagatttg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggacaagcca
agtttcagcactgctttttctgaatccctaaaggatactgcaatcagtgaggagtttttg
gtgaatctctctactgttttacagttgacaatatctgaaaaaattggagttggccttgca
ttgtcagactcggaaaatgttgatgtcaggaaatgtggaaccaactattgcatgggtcag
atagcagaattatgttccaccaattcttctttagatgatgtcatgccaattcagagtgtt
cttttgtttctggatcaatctgaaggcctctctaagcatgtagacttgtttatgcatatg
ctatcgctcatccagtcaaaagaagaagcccagttcattttaactcctttgctttctgat
gaacttcgtgaagctaattttttgaggaacttagatttcttaaatgatggtggtgaagat
gattttgatgctcttgtggcagaaatggagaaggaaatgagcatagcggacataatgaag
gaattgggttatggatgcactgctaatgtcttgcaatgcaaagaaatgttatccttattt
ttgccgttgactgaagtaactgttgctaggatacttggtatggttgtacatacccgctct
ggcattgaggataaccagaatgtgttctcaacgttccgtgctgctcttggtagcagcact
gtatctgatccatctccattggattcttggaatgctgacgtccttattgatgcaataaag
caacttgctcctggacttaactgggtaactgtaatggaaaacctagatcatgagggtttc
tatattcccgatggaacagccttttcctttttgatgtccatttacaaacatgcctgtcag
gatccttttcctcttggagctatttgcggttctctctggaagaatgctgagggtcagctt
tccttacttaagtatgctgtctcggtgcctcctgaagtatttaccttcgcgcattgtggg
aggcaactggcttatgttgatgcggtgaatgaccataaaatccaaattggacatgcaaat
catgcatggttgtgtcttgaccttctcgaagttctttgccagttggctgagagaggttat
gcaagttctgtgcgatccattctggagcaccctctgaagcactgtccagaagtcttgctt
cttgggatggcccatatcaatactgcgtataatctcctccagcatgaagtttccgctgct
gttttccctgttatgctaaaaaatactggtgctaatggtatgattcttcatttgtggcat
gttaatcctagcatcttgttgcggggtcttgttgatacattgaatgttgacctggagaac
acctacaaagtcttggatacatgtcaagagcaaaagattctatcatcggtactggatatg
attccttatgctttcggcatcagacttgctgcccttgcttcccgcaaagaactcgtggat
ttggagaaatggttaagcaataacttaagcacatttaaagatatcttctatgaggaatgc
cttaagttcttgagggaggtacatctcgctgctcaagatgttgcttccaaccgctttgat
cctcccaatgctctttggactatttattcagaaacttcttcaacctttttaaaggtactt
aagtctcattctggtctagtttcttcacgccacttatcggaggagctggacaagttgcac
ataacatacatggatgctaattcaaggcttaagagtgttggtggtgctgattcatccact
tctgatggttctgatgatattgaagcggaagcaaacatatacttccatcaaatgttctct
ggtcagctgactaatgatgcaacagttcaaatgcttgctcgtttcaaagaatcgactgaa
aaaagggagcaagcaattttcgagtgcatgattgctaatctgtttgaagaatacaaattt
ttctccaagtacccagaaaggcagctcaaaatagctgctgttctatttggatcacttatt
aagaatcagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggatgcg
ttgcgcaagcctgctgattcaaagatgtttgtttttgggattatggcacttgaacagttt
gttgaccgtctgattgaatggccacaatactgcaaccatatcttgcaaatttctcatctc
cgggcaactcattcggagcttgttgcgttcattgaacgggcgcttgctaggatatcactg
gcacattctgaatcagaggtagcccacagtcccgctgctgatcaattccatggtcctata
acatcttccccaatgaatgccgagggttcaacatttcccgtggttggacagggtagcttg
cagcaaagtatgcagggatcctcttcaaaccagcttcctcagagacagcaaagttcctta
gatgagagaaaaccctctgctgttctctccagctacttgaagccggctttatcatctgca
gtgcaacctgccgctgttccttcaagtgatacggctggcattcagaagccacagggttca
gtcagtgcttcagcagtactcacttcttctcctggttttcttcgtccatctcgggccatt
acctcagcaagatttggttctgcgttgaatattgaaacacttgttgctgctgcagagaga
agagaaacacccatagaggctcctgcatcagaaattcaggataagatatcatttattatc
aataacttatctgcggcaaatattgaagccaaagcgaaagagtttactggaattttggaa
gagcagtactacccgtggtttgctcagtatatggtgatgaaaagagcgagcattgagcca
aattttcatgatttgtacctgaagttcctagataaagtaacttcaaaagctttgtacaag
gagattgtccaagcaacctacgagaattgcaaggttcttttagggtcagaattgataaaa
tcaagttcagaagagcgttctttgctgaaaaaccttggaagctggctagggaaaattaca
attggaaggaatcaagtcttgagggcgcgggagattgatccaaagtctttgattatagag
gcgtatgaaaaaggtttgatgattgcagttattccttttacttcgaaggttctggaacca
tgccaaagcagtctagcataccaaccgcctaacccttggaccatgggtattcttgggtta
cttgctgagatttacgcaatgccaaatcttaaaatgaatctcaagtttgacattgaggtc
ctgttcaaaaatcttggtgtggatctaaaagaggtagttccaacttctcttctcaaggac
agggtgagagaagtggaaggaaatcctgacttctcaaacaaggatgttggatcttcccaa
ccacctatcgtgggtgatgtcaaatctggcattatatcttcactaaaccaggttgaacta
ccacttgaggttcccagtccttctcatcctagtggcccttcgcgtattttaactcagtat
gctgctcctcttcatattccatctgctccaatgacggaggatgagaagctagcagtgctt
gggctgtctgatcagcttccttctgctcaaggtcttttacaagggcaatcacctttttct
gttagtcagcttcctgcacctgcatctaatattgagcagcaatttgttgtcaatcctaag
cttcatgctctgggcctgcagttgcattttcagagtgtacttcccattgctatggataga
gctatcaaagagattgtgtccagcattgtgcagcgcagtgtttctatagcaactcagacg
acaaaggagcttgttttaaaggactatgccatggaatcggatgagacccgcatatgtaat
gctgcacatttgatggttgccagtttgtcaggaagtctcgctcatgtgacatgcaaggaa
cctttacgtggttcaatatcgggccagcttcgtactttacttcagggattgggtattgca
agtgagctccttgaacaagctgttcagcttgttactaatgacaatctcgatcttggctgt
gcaatgattgaacaagcagcaacagataaggctatacagacgattgatggagaaatagct
caacagctagccattagaaggaagcacagagagggtgttggtccgacattttttgatgca
agcctttatacacaaggacatatgggtggtttaccagaagctcttcgccctaaacctggc
cgcttatcccattctcagcaacgagtttatgaggattttgtccgcttaccttggcaaaat
caatcaagccaaagcccaaacgctgttcctgctggtccatctacttcttctggcagcggt
ggtgtctccagggcttatatggctggaagtggacaaatgaaccccagcctttactcgtct
ggcgttgtaaatgcaggaattagtgctgttccgcagccattggaaatatcagatgagata
gatacttcatctcagcttaatagtgcatcttctccccatcttgggatgggtgatagtgcc
gcttctaacaattttgaaaccgaggctattgctgaaccattcacatcggtgtcagctcct
gaattgcatccactggaaccttcaaacattgcaaaggactcgggagcttctttacagcca
tcaaatgcaacagctgcctctgaacgtgttggaaatagtatctcggaaccattgctgaca
actggtgatgctttggataagtaccagattatttctgaaaagcttgaaagcctggtgagt
gaagaagctaaggaggcagaaattcaggcgcttattgctgaagttccagcagtcatcctc
aaatgtattagtagagatgaggctgccttggcagtggcccagaaggctttcaagggattg
tatgaaaatgcatcaaatagtgcacatgttggtgctcatcttgcaattctggcttcaatc
cgtgatgttagcaagctttttgttaaggagctaactagctgggttatttactccgaagag
gagcggaagttcaacaaagacattacggttggtttgatacggagtgaactgctaaacctt
gctgagtataatgtgcacatggctaaattacttgatgctggcagaaacaagtctgctact
gaatttgctatatctctaattcaagcgctggtgataagtgattcgagagtcatatcggag
ctacaaaaccttgttgaagtgctggctaagattgcagcaagaccagggtctcctgagtct
ctacaacaactagtggagatcgctaagaaccctgctgctgctaatgctgctacactgtct
agtgttacttttgggaaggaggatagcaacaaacaatctagagacaaaaagattgctggg
cctgctactggtaccagagaagattatggtgtttctgaatctgttgaaccggatcctgca
ggctttcgcgagcaggtctctatgctgtttgctgaatggtaccgtatttgtgaaattccg
ggagcgaatgatgcaactcatgctcattatatcctgcaattgcaccagagtggcttatta
aaaggcgatgaaacttcagatcgttttttccgcagactcacggaactttccgtctcgcat
tgcctttcgtctgaggttatgagttccacccctcaatctcaccaagcacaacctctatcg
ttccttgcaattgatatatatgccaaattagtgttctcaattttgaagttttatcctgtg
gatcagggatctagtaaattattgctgctgccaaaggttctcgctgtcactgtcaaattc
atccagaaagatgctgaggaaaaaaagatgacatttaatcctagaccatattttaggctt
ttcattaattggctattggatctctgttccctggaccctgtttttgacggtgcaaacttt
caggttttaacagctttggccaatgccttccatgctcttcagcccctcaaaattccagga
ttcagctttgcatggcttgaacttgtaagtcaccgaagttttatgccgaaacttcttgct
gggaatgctcagaaggggtggccttattttcagcggttgttggtggacctcttccagttt
atggagccctttcttaggaatgctgagctaggagaaccggtccagtttctgtataaaggg
actctcagggttttgttggttctcctgcatgattttccagagtttctgtgtgactaccat
ttcagcttctgtgatgttatccctccaagctgcatacaaatgcgaaatataattttaagt
gcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgatcta
cttgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaagca
aagcagatcaagggtgatgtagatgaatatctgaagacaaggcaacagggatctccattt
ttgagtgaattgaagcagaagttgctgctctctccaagtgaagccgccaaggctgggacg
cgctacaatgtaccccttatcaactcccttgtactctatgttggaatgcaggctatccag
cagctgcaggcaaaaactcctcatgcacagtcgatgcccagtagtgttccatttgcagta
ttcttggttggtgctgctctggatattttccagactttaataatggacttggacacggag
gggcgttacttgtttttgaatgcagttgctaatcaattgcgatacccaaacaatcacaca
cattacttctcctttattctgctctacctatttgcggaatcaaatcaggagatgatccaa
gagcagataaccagagtcctattagaacgcctgattgtgaatcgacctcatccgtggggt
ctcctgatcacgttcattgagcttataaagaatcctaggtacaacttttggagtcgacca
tttacaagatgtgctccagagatagagaaactgtttgagtctgtctcaagatcatgtggt
ggccctaaacctgtggatgagagcgtggtgtcaggtggaatacctgatatccattag
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integrated database retrieval system
