Nicotiana sylvestris (wood tobacco): 104226735
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Entry
104226735 CDS
T05026
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104226735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104226735
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104226735
mRNA degradation factors
5'-3' decay
Lsm complex
104226735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
104226735
NCBI-ProteinID:
XP_070027387
LinkDB
All DBs
Position
3:188208037..188221529
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AA seq
128 aa
AA seq
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MSWASPEDIYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACDRVIVGDL
YCDIPLGLYIIRGENVVLIGELDIDKEELPPHMTRVSEAEIRRAQKAERDATDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagtccagaagatatctatctctctacttctcttgcaagctatcttgac
aagaaacttcttgtactgctgcgagatgggcggaagcttttaggaacacttcgttctttt
gaccaatttgctaatgctgttcttgaaggtgcatgtgaccgtgttattgttggtgatcta
tattgtgatatcccattaggactttatattatacgtggggaaaatgtcgtgttaattggt
gaactggacatagataaggaggaacttcctccccatatgacacgtgtttcagaagctgag
ataagaagggcgcagaaagcagaaagggatgctacagatcttaaaggcacaatgagaaag
aggatggaattccttgatatggattga
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