Nicotiana sylvestris (wood tobacco): 104227233
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Entry
104227233 CDS
T05026
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nsy03036
]
104227233
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104227233
microRNA pathway
RISC loading complex
104227233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
dsrm
SNF2-rel_dom
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
104227233
NCBI-ProteinID:
XP_009777737
UniProt:
A0A1U7WCM4
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All DBs
Position
8:complement(156647540..156684639)
Genome browser
AA seq
1651 aa
AA seq
DB search
MEKKKENPLKRNFEDLCSEDEQMAVEKKQKEDFIPRDYQLEVYEVAMRRNTICVLETGAG
KTYIAVMMIREISKTLRTGDEKKFIVFLAPTVHLVHQQYEVIRHHTQLAVQEYYGAKGVD
DWNAEKWKTETDDNDVLVMTPQIFLDALRKGYIKFGRVCFLILDECHRASGKHPYKMIMT
EFYHQSTRTSKVFGMTATPVTRKGVSSSTDCEEQISELESLLDSQIYATEERVGLGEFVP
SAKETCKFYDPIVSSNLEIKAKLEASWSKFDAALVDLQLSVSSQYKDTDDNYMKLRKRLS
NFYAKILCCLENLGIICAYEAVTVCLGNVPDDKEENEILRKSSLQQRYFLEEALSIIQES
MPQDCESLLDVGYDSSATLSMGLISSKLHVLLEIFKSLRKATQVRCLVFVERIITAKVIE
RVMKTMTWFSDFTIAYLTGTNTSVDALTPKVQKETLECFRSGKVNLLFATDVVEEGIDVP
HCSSVIRFDLPKTVRSYVQSRGRARQTESLYILMLERGNMKHREQMFDIIRSEYSVTDTA
IKRDPDVCVVKPCLVKETNAYYVEATGASVTADSSVSLLNKYCEMLPGDKFFSPKPNFEY
ILSGDLYQCKLTLPTNAAFQTMVGPECRNIQLSRQLVCLDACKKLHQIGALNDHLLPLNE
KPSKSDLHVQDKHVGAGTTKLKELHGTAHISALSGTWGYDPNGEVFQAYKMNFSCNIPEV
NYSSFVLLLQSELDDDVGNVEVELFLVSKFVQSSVSHCGKLHLDAQQVAKAKLFQELFFN
GVFGKLFVKSSGGRKFLLETDESLWEPSNMYLLLPLDPLDSSCEPCRIDWGGIESSVSVV
KFLKRNAWLNAEQSETTRKNSLVDRTAAFMVDLDQTDLIHFANMSVCRSKLKDMVVVAIH
TGRIYSVLDAVVNTSAESPFEVNSEATQSPFSSFADYFHKKYGIVLLYPGQPLLLLKQSH
NAFNLLVDFQKEGVSCGTNSKDSKMVVQKPLNNVHMPPELLVGIDIRIDILKSFYLLPSL
MHRLESLMLASELRKEITSHSGDLHISSSLILEALTSLRCNESFSMERLELLGDSVLKYA
VSCHLFLKYPKKHEGQLSDRRSWAVCNSTLHKVGTSRHLQGYMRDGAFDPRRWTAPGQLS
LRLCPCDHGVETSEVPLDKKFLTEDPKVVVGKHCDRGHRWMGSKTISDCVEALIGAYYVG
GGFIAALKLMKWLGVEAELEPSLVEDAIKTASLYSYTPKAKDIEDLELKLTYKFSVKGLL
LEAITHATVLEVDVSYNYQRLEFLGDSVLDILITWYLYQKHKDIDPGELTDLRSASVNND
NFAYAAVKRELHVHLQHHSGYLESEISAFVKLVSVSCSLQGNKAPKVLGDLVESIAGAIL
IDTKLNLDEVWKIVKPLLSPIVTPDKLELPPLRELIELCDSLGYFLKDHCMVKGDTVHAE
LRLQLKNELLVAEGCGQTRKNAKGQAALKLLKDLEYKGISSKKKKQETSLVDVPHSLGSD
GDICSQANNTCPAMAPCKKQKTILLKLETAKAQPSSACNSNKDIQAIGPINMKKGGPRQS
LYELCKKLQWPMPSLESTERKSKSLIECGEGSDKRKVYNTFASQISLTIPDYGLIELTGD
ERADKKSSQDSAALLMLYELERRGKVIIGNQ
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaagaaagaaaacccattgaagagaaactttgaagacttatgtagtgaagat
gaacaaatggctgtagagaagaagcagaaggaagattttattccaagagattaccaattg
gaggtatatgaagtggcaatgaggaggaacactatatgtgtattggaaactggggctgga
aagacatatatagcagtgatgatgatcagagaaattagtaaaacattgaggactggtgat
gagaagaagtttattgtattcttggcacctactgttcatcttgttcatcagcaatacgag
gttatacgacatcatacgcagcttgcggttcaagaatactatggggccaaaggagttgat
gactggaatgcagaaaaatggaaaaccgaaactgatgataatgacgttttggttatgaca
ccccaaattttcttggatgcactgagaaagggttacataaaatttggtagagtgtgcttt
ctgatactagacgagtgtcatcgtgccagtggtaaacatccctataaaatgattatgacg
gagttctatcatcaatccacaagaacatcaaaggtttttgggatgactgctacccctgtg
actagaaaaggtgtttcatcttcaacagactgtgaggagcaaatatcagaacttgaaagt
cttcttgattcccagatatatgcaacagaggagagggtggggctgggcgaatttgttcct
tccgcaaaggagacttgtaaattctatgatccaatagtgtcttcgaatttagaaataaag
gcaaaattggaagcttcatggtcaaagtttgatgctgcattagttgacttgcagctgtca
gtatcaagtcagtacaaagatacagatgacaactatatgaagcttcggaagagattatcc
aatttttatgcaaagatattgtgttgccttgaaaatctaggcatcatatgtgcgtatgag
gctgttacagtctgtttgggaaatgtccctgatgacaaagaggaaaatgagattcttagg
aaaagttctctccaacagagatacttcttggaagaggcattgtcaattattcaggaatca
atgccacaagactgtgagagtcttctagatgttggatatgactcgtcagctacactgtca
atgggccttatatcttcaaaactgcatgtgcttcttgaaatttttaaatcccttaggaaa
gctacacaagtacgctgtctcgtttttgtcgaaagaattatcacagctaaagtaattgaa
agagttatgaagacaatgacctggttttcagatttcacaatagcatatttgactggaaca
aacacatcagttgatgcactgacaccaaaagtgcaaaaagaaaccttggaatgttttcgc
tctggaaaggtcaatttattatttgctactgatgtggttgaggagggaattgatgtgccg
cactgttcttctgtgatacggtttgatttaccaaaaacagttcgaagttatgtccagtct
aggggacgagctcgtcagactgaatctctgtatatactaatgcttgagaggggaaacatg
aagcacagagaacagatgtttgatatcattaggagtgaatattctgtgacagatacagct
ataaaaagagaccctgatgtttgtgttgtgaaaccttgtctagtgaaggaaactaatgca
tattatgtggaggcaactggagcttcagtaactgcagattctagtgtcagtctcttgaat
aaatactgtgaaatgctgcccggagataagttcttctctccaaagcccaattttgagtac
atcttgtctggggacttgtaccagtgtaaattgacgttacctacaaatgcagctttccaa
acaatggttggtccggaatgcaggaatattcaattgtcaagacagctcgtctgcttggat
gcatgtaagaagctgcatcagataggtgctctgaatgatcatcttcttcctctcaatgaa
aagccttccaaaagtgatttgcatgtgcaggacaaacatgtaggggcaggaacaacaaag
ttgaaagaattacacggcacagctcatattagtgcattatccgggacatggggatatgac
cctaatggagaagtatttcaggcgtataaaatgaacttctcttgcaacataccagaagtg
aattattccagctttgtccttttgcttcaatcagaactagatgatgatgtgggaaatgtg
gaagttgaactcttcttagtctccaagtttgtccaatcatctgtgtcgcattgtgggaaa
ctccatttggatgctcaacaggtggcaaaagcaaaactcttccaagaactattctttaat
ggggtgtttggtaaattgtttgttaaatcatcgggtggaaggaaatttctacttgagaca
gatgaatctttatgggagccatcgaacatgtacttgctactaccactggatcctttagat
tcaagttgtgaaccttgtagaatagattggggaggaattgaatcttctgtgtcagttgtg
aaatttttgaaaagaaatgcttggttaaatgctgaacaatctgaaactacccggaagaat
tccttagttgataggactgcagcgtttatggtagatctcgatcagacagatttgattcac
ttcgccaatatgtcagtctgtagaagcaagcttaaggacatggttgttgtggccattcat
actggaagaatctattctgttctggatgctgttgtcaatacttctgcagagagccccttc
gaagtaaattcagaagctacccagtcacccttttcatcatttgctgactacttccataaa
aagtatggaattgttttactgtatcctggacagcctttgttgctgctaaagcaaagccat
aatgcattcaatcttcttgtggattttcaaaaagaaggcgtttcctgtggaacaaattca
aaagatagtaaaatggtggtccagaagccgctgaataatgttcacatgccaccagaactt
ctggtgggtatagatattcggatagacatcttgaaatccttctacttgctgccctcatta
atgcaccgtctggagtccctgatgttggctagcgagttgaggaaagagataacaagtcat
tcaggcgatttacatatatcaagctcattgattctggaagctcttactagtctaagatgc
aatgagagtttctccatggaacgtctggaattgcttggagactcggttctgaagtatgct
gttagttgtcacctcttccttaaatatcccaagaagcatgaagggcagctatctgatcgg
cgttcatgggctgtttgtaactcaaccctccataaagtgggaactagtcgccatttgcag
ggctatatgagggatggagcatttgatccacgccgatggactgctcctggacagctttcc
cttcggctttgtccttgtgaccatggggttgagacgtcagaagtgcctttggacaagaaa
tttttgactgaagatcccaaagtagtagttgggaagcactgtgatagaggacatagatgg
atgggctcaaaaacaatatctgactgtgtcgaagcgctgataggtgcatactacgttggt
ggtgggtttattgctgccctgaaattgatgaaatggcttggtgttgaagctgaacttgaa
ccttcattagtagaggatgcgatcaaaactgcatctctttactcctatacccctaaagct
aaagatattgaagaccttgagttgaagcttacctataaattttctgtcaagggattgcta
ctagaagctataacacatgctactgtgctagaagtggacgttagttacaattatcagaga
cttgaatttctcggcgactcagtactggacattctcattacctggtacctttaccagaag
cataaagatattgatcctggggaactgacagatttgcgctctgcttctgtcaataatgat
aattttgcttatgctgctgtgaagagggagcttcacgtccatcttcaacatcactctgga
tatcttgaaagtgaaatatcagcatttgtgaagttggtctctgtttcttgttcactccaa
ggaaacaaagccccaaaggtacttggagacttggtggagagtattgctggagcaatactt
attgatactaagcttaacctggatgaagtttggaagatcgtcaagccactattatctccc
atcgtgactcctgataagctcgaactacctccgttgcgtgagctcatagaattgtgtgac
tctcttggctacttcttgaaagaccattgcatggtgaagggggatactgtgcatgcagag
cttaggttacagctgaaaaatgagttgctggttgctgagggatgtggacaaactagaaaa
aatgcaaaggggcaagcagctctgaaattattgaaggacttagagtataaaggaatttca
tccaagaaaaagaaacaagagaccagccttgttgatgtgccacattctttaggctctgat
ggtgacatctgcagccaagcgaataatacatgtcctgctatggctccatgcaaaaagcaa
aagacaatacttttgaaattagagacggccaaagctcaacctagcagtgcttgtaattca
aataaggacatccaagcaattgggccaatcaacatgaaaaagggtggaccacgtcaatca
ctttatgaactgtgcaaaaaactgcagtggcctatgcctagtttggagtcaacagagcgt
aaatccaagtcactgattgaatgcggcgaagggtctgataaaaggaaggtttacaacact
tttgcatctcaaatctcgttgaccatacccgactatggtttgatagagcttactggggat
gaaagagctgataagaaaagttcacaagattcggctgcacttctcatgctgtatgagctt
gaacgacggggaaaagtcataattggtaatcaatga
DBGET
integrated database retrieval system
