KEGG   Nicotiana sylvestris (wood tobacco): 104227898
Entry
104227898         CDS       T05026                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104227898
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104227898
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104227898
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104227898
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 104227898
NCBI-ProteinID: XP_009778571
UniProt: A0A1U7WMQ9
LinkDB
Position
6:209696116..209704119
AA seq 128 aa
MSWASPEDIYTSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACDRVIVGDL
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVPEAEIRRAQKAEREATDLKGSMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaagtccagaggatatctatacctctacttctcttgctagctatcttgat
aaaaaacttcttgtgttgctgagagatgggcgaaagcttttgggaacacttcgttctttt
gaccaatttgctaatgctgtcctagaaggggcatgtgatcgtgttattgttggtgatcta
tactgtgatattccattaggtctttatattatccgtggggaaaatgtcgtgttaatcggg
gagctggacgtagataaggaggaacttccaccccacatgactcgcgttcctgaagcagag
ataagaagggcccaaaaagcagaaagggaggcgacagatcttaaaggttcaatgagaaag
aggatggaattccttgatatggactga

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