Nicotiana sylvestris (wood tobacco): 104228357
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Entry
104228357 CDS
T05026
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104228357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104228357
03041 Spliceosome [BR:
nsy03041
]
104228357
03009 Ribosome biogenesis [BR:
nsy03009
]
104228357
03016 Transfer RNA biogenesis [BR:
nsy03016
]
104228357
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104228357
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104228357
Spliceosome [BR:
nsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104228357
Complex C
U4/U6.U5 tri-SnRNP related factors
104228357
Ribosome biogenesis [BR:
nsy03009
]
Eukaryotic type
Pre-60S particles
Helicases
104228357
Transfer RNA biogenesis [BR:
nsy03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104228357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DksA_N
Motif
Other DBs
NCBI-GeneID:
104228357
NCBI-ProteinID:
XP_009779116
UniProt:
A0A1U7WP86
LinkDB
All DBs
Position
5:complement(43627273..43635457)
Genome browser
AA seq
999 aa
AA seq
DB search
MESSSPTAGKRKQPEEENSDVNSVQKLNSSSSKRVTLARTCVHEVAVPTNYTSTNDETIH
GALSNPSYNGEMAKTYPFKLDPFQEVSVACLERKESVLVSAHTSAGKTAVAEYAIAMAFR
DKQRVIYTSPLKALSNQKYRELSHEFSDVGLMTGDVTISPNASCLVMTTEILRGMLYRGS
EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICNIH
KQPCHVVYTDFRPTPLQHYMFPVGGSGLYLVVDENEQFREDNFVKMQDSLAIQKSGENKS
TANAAKVRGRIARGGSSSGVSDICKIVKMTMEKKFQPVIVFSFSRRECEQHAMSMPKLDF
NTEEEKEVVYEVFRNAMDCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLF
QEGLIKALFATETFAMGLNMPAKTVVFTNVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD
RGICIIMIEEQMEMNSLKDMVLGKPAPLVSTFRLSYYTILNLMSHAQGQFTAEHVIKNSF
HQFQYEKALPDIGKKVSKLEEEAAMLDASGEAEVAEYHKLKLEIAERERKLMAEITRPER
VLHFLLPGRLVKVWEGGKDWGWGVVVNVVRKPPAPSGSLPAALSASRGTGYIVDTLLHCS
LGSGENGSQPKPCPPRPGEKGEMHVVPVQLPLISSLSKLRISVPGDLRPLEARQSILLAV
QELQKRFPQGLPKLNPVKDMGFEDPEFVDIVNQIEELEKKLFAHPLHKSQDEHQLKSFQR
KAEVNHEIQQLKSKMRDSQLQKFRDELRNRSQVLKKLGHIDADGVVQLKGRAACLIDTGD
ELLVTELMCNGMFNNLDHHQTAALASCFIPGDKSNEQINLRAELAGPLQQLQDNARRIAE
IQRECKLEINVEEYVAASVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRLARRLDEF
LNQLKAAAHAVGDVALENKFGAASESLRRGIMFANSLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttcttctccgactgcagggaaaagaaagcaaccggaggaggagaactccgac
gtgaactcagtccagaagctaaattcatcctcctcaaagagagtcactttagctcgaacc
tgtgtccacgaggtagcagttccaactaattacacttcaaccaacgacgaaacaatccat
ggagccctctcaaacccttcttataacggcgaaatggcaaaaacctaccccttcaagctc
gacccatttcaggaagtatccgtcgcctgcttggaacgcaaagaatcagttcttgtatcc
gcacatacctccgccgggaaaacagcagtcgccgagtacgcaatcgcaatggcatttagg
gataagcagagagttatttatacttcacctttgaaagcattgagcaatcagaagtatagg
gaattaagccatgagtttagtgatgttggtttgatgactggtgacgtcacaatttcgcca
aatgcaagttgtttggtgatgacgacggagattttaaggggtatgctttatagaggttct
gaggtattaaaggaagtagcttgggttatatttgatgagatacattacatgaaagatcgc
gagagaggggtagtttgggaagagagtattatattcttgccaccggctattaagatggtg
tttctttcggctacaatgtcgaatgctactcagtttgctgaatggatttgtaatattcat
aagcagccttgtcatgtggtgtatacagattttcggcctacccctttgcagcattatatg
ttccctgtgggtggttctggattgtatcttgtggttgatgagaatgagcagtttagggag
gacaattttgttaagatgcaggatagtcttgcaatacagaaatcgggggaaaataagagc
actgcaaatgctgctaaggttagaggtagaattgctagaggtggctcttcttctggtgta
tcggatatctgcaaaattgtcaagatgaccatggaaaagaagtttcagccagtcattgtg
ttcagttttagtagaagagaatgtgaacaacatgcaatgtctatgcccaagcttgatttt
aataccgaagaggagaaggaagtagtgtatgaggttttccgtaatgcaatggattgcttg
agcgaggaagatagaaacttaccagctattgaattgatgttgcccctacttcagcgtgga
attgctgttcaccattctggcctgcttcctgttatcaaggaacttgtggaacttctcttc
caagaaggacttataaaggctctttttgcaacagagacatttgccatggggctaaacatg
cctgcaaaaactgttgtttttaccaatgtaaagaaatgggatggtgatagtcatcgttac
attggatctggtgagtatattcagatgagtggaagagcaggacgtcgtggcaaagatgac
cgtggtatttgtattatcatgattgaagagcagatggagatgaatagcctcaaggacatg
gtattgggtaagccagctccattagtcagcacatttaggctgagttactacacaattttg
aatttaatgagtcatgcccaaggccaatttactgctgagcatgttatcaaaaactcattt
caccagtttcagtatgaaaaggcgttacctgacattgggaagaaggtctctaagctggaa
gaagaagctgcgatgcttgatgcatccggggaggctgaggttgcagaatatcataaacta
aaacttgagatagcagaacgtgaaagaaaacttatggctgaaataacacgacctgaaagg
gttctccattttcttcttcctggtaggctggtgaaggtatgggaaggtggaaaagattgg
ggttggggtgttgtagtcaatgtggtgaggaagcctccggcaccgtcaggttctttgcct
gctgcactctctgcttcacgtggcactggatatattgttgataccctacttcattgctct
cttggttctggtgaaaatggttctcaacccaaaccatgtcctcctcgtccaggggagaag
ggagaaatgcatgtggttcctgttcaattacccctgatttcttcgctcagtaaacttaga
atatctgttcctggggatcttcggccattggaagcaaggcaaagcatcctgcttgctgta
caggagcttcagaaacgttttcctcaaggcctcccaaagcttaaccctgtaaaggacatg
ggttttgaagatcccgaatttgttgatatagtgaaccagattgaagaactagagaaaaaa
ttgtttgctcacccactgcacaagtcacaagacgaacatcaacttaagagtttccagaga
aaggcagaagtgaaccatgaaattcaacaactcaagtcaaaaatgcgtgattcacagctt
caaaaatttcgggatgaacttagaaaccgttcccaagtcctgaagaagctgggtcacata
gatgctgatggtgttgtgcagttgaagggacgagcagcctgcttgatagacactggggat
gaactccttgttactgaactgatgtgtaatggtatgttcaacaatcttgatcatcatcaa
actgcggccctagcaagctgctttatcccaggagacaaatcaaatgaacaaataaattta
agagctgagcttgctggaccattgcagcaactacaagataatgcaagaagaatagcagag
attcaacgtgaatgcaagttggagataaacgttgaagaatatgttgcggcatcggtacga
ccattcttgatggatgtcatctattgttggtcaaagggagcatctttcgcggaggttata
caaatgaccgatatctttgaaggaagcatcattcggctggcacgaaggcttgatgaattt
ttgaaccagttgaaagctgctgcacatgctgtgggagatgtggctttggagaacaagttt
ggtgcagccagtgaaagcctccgacgaggaataatgtttgcaaattcgctgtacctctag
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