Nicotiana sylvestris (wood tobacco): 104228410
Help
Entry
104228410 CDS
T05026
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104228410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104228410
03036 Chromosome and associated proteins [BR:
nsy03036
]
104228410
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104228410
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
104228410
COMPASS/SET1 complex (yeast)
104228410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
PQQ_3
NBCH_WD40
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_VPS8
Methyltransf_13
Motif
Other DBs
NCBI-GeneID:
104228410
NCBI-ProteinID:
XP_009779174
UniProt:
A0A1U7WWW8
LinkDB
All DBs
Position
9:complement(141067186..141084312)
Genome browser
AA seq
331 aa
AA seq
DB search
MTALSELNDDIVRSMTVASVFSDFGGQINSLDFHRKEDLLITASEDDSIRLFDIANGKLL
KTAYHKKHGADRICFTHHPHSVICSSIHNLDLHGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGGAVK
LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTSNSIYVLDAYGGEKRCGFN
LDPSPTAMEATFTPDGQYVVSGSGDGNLHAWNINTLNKVSSWDSHIGVPSCLKWAPRRVM
FVAASSVLTFWIPNHGAGDAAGAQTEQVTLQ
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgacggcactgtcggagctcaacgatgacattgttcgtagcatgaccgtagcgtcagtc
ttctcagattttggcgggcagataaactctcttgattttcatcggaaagaagatttgctg
ataactgcaagtgaggatgactcaattcgactttttgacattgccaatgggaagttgctg
aagactgcatatcataagaagcatggagctgatcgaatatgctttacccaccaccctcac
tctgttatatgctcttcaatacacaacttggatttgcatggagaatctttgcggtaccta
tccatgtatgataatcgatgccttcgttactttaagggacataaagagagggttgtgtca
ctgtgtatgtctccagttaatgacagcttcatgtctggttctcttgaccatagtgtcaga
atatgggatcttcgtgtaaatgcctgccaggggattttgcgtctaagaggtaggcccgca
gttgcttatgaccaacaaggccttgtctttgcagtggcaatggaagggggtgccgtcaaa
ttgtttgattcaagatcgtacgacaagggaccctttgataccttcctagttggtggagac
acagctgaggtttgtgacataaaattcagcaatgatggaaaatcaatgctcttaacaact
actagtaacagcatctatgtccttgacgcctatggaggagagaagcggtgtgggtttaat
ctggatccctccccgacagcaatggaggcaacctttacaccagatggccaatatgttgtt
tcaggttcaggagatggaaacttgcatgcgtggaacattaacacactaaataaggtttct
agctgggatagccacataggcgtcccatcctgcttgaaatgggcgccaagaagagtaatg
ttcgttgctgcatcatcagttcttaccttttggatccctaatcatggtgctggtgatgcc
gctggagcccagacagaacaagttactcttcaatga
DBGET
integrated database retrieval system
