Nicotiana sylvestris (wood tobacco): 104229366
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Entry
104229366 CDS
T05026
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nsy03036
]
104229366
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Meiosis-specific proteins
Others
104229366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cauli_VI
Motif
Other DBs
NCBI-GeneID:
104229366
NCBI-ProteinID:
XP_009780305
UniProt:
A0A1U7X1E7
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All DBs
Position
3:complement(133736291..133755010)
Genome browser
AA seq
1625 aa
AA seq
DB search
MRTRFLCTDYFNSTPISARDFLRLPLSPLLTDPNTSKFEDLNFSDGVSTLSIDVEIEKFP
IEAALSSFFADVLPHNIDIELSEFADPQPFASCSSEVQTSETTNSEGTIVSYSKGKENLE
MVQLEIRVLDTSWLPLLEDIPYFGKENMSIPSHSDGEDKLDMPGLEVWLPDSPEILQSIC
SVDDISSVALLEKSADLMEDGAFCQGQYHSSTSVFPHLEVDEAGLVIVSDKSVKEKVASI
ENIELHCETPGSEGMGRSNELLGSIKFDTMQYLSDGSFTMGSCEVEVPCLNFSAEMDLIS
IIELEKNLVIHESIENDGLIWVASPIIFDELQFFDSDLFSFHEFQSEAKVDIDKDTCDLM
LREAENFRNFDELLVSHELIPVDNSFRSLPVPPVPENGNIKSLYLCIKEILAELELQSPS
MSDGLYLDWPFLEEEKCEYREDCFNLLRDIDANDIAFCLNFSDNEMLVSDYFFSSDSPQE
PNRAESKEMLSIPSNGNPISPIPYNIEVSTKLLNDGKFPTEGVSSQCIARKASSFGDSRS
KFNDLDFFLNRKEYSRGKDYKPADSSIDTSATDQISFLSSSATTLLQPQWNIKVHQILLS
TDILLLIDYLKKIFLAIFERQRELVEIQDPSQAVDDDAILRLPKKKLINLIKKRGMCRSS
LFQDGEKTMSLVTLSAIKQMVWYLCYYDLHSTYLYIEKLSRSLQGLESKLDFIYNIVKDV
HQKGENDIHKFHPSLSVIKDILETFKSKDSSKILIVAEPVFWWSLKKLLTSMNIAFFQQQ
NGQKDDFYKLEDASMQMIHESDCCLVTHEHLFASFPFEKFEIILEYGGSQESSKVSSILP
KSDRVPPLHFLKVELEDPSVAKALCDGVDMSNINEASVEGGPHFCSTLNEMDVTFEELLN
YLPVEKNLKGGSMEALLGNEACSTAAEDAVFSSKSKQNCRSIDGCPETIVIVNTHNFDTE
MVISRRSTYQKILAFEKKGVQVIERDLRQPVDIIVSASACLAWYDCKNIAKKATASDEAF
SCLPQCVENLAANILTSLSFAFSGCTLVFEGESDFIAGIMESSDELYAAAASLGMDIRIF
YSYSSEMTDEIILSCIELSLRTSRGLFPKMHETQTLAESFLSAFPSINPLSAHAILSSAG
LLVEFLEWTHERRIHAVQKYQVPDESITLLSALSRFGEREDSKSGMTDCSSSVSSAPGSE
SLHCKSNSVGTKRKTTWNTENLNMPTNELFDFDPPLTFSKDRPNHPRASGLCDSRISEDI
DFFDEFGNSSLSFDTELCVQRQSLDTYGTEDLFKVTELCDYQMRKDPQMGNELNKLEAPQ
CLRPRERVYVCMMNKLDRKNNYSGNFKEDITDEVIDIDDTPATRKAFRNAKYKSFSTLEH
AMERSKTGVPKAAKKLFFGASGLQEFPTTVDIDSSPDACTSVRNHGQGSGQGMGQHLNAG
FYHKKSQIKHKKGVTEEGVSEKVNCLSDLTVQDNNTACYGETPLSSARQSTRLQQGSPWT
IEFLNKMREKSRSRQQFLPRDLSAPWHGYPGKSSEVTNRKSPSTIEFYKYQGNSCQEAGT
RRKRPMKCIQLPASTTEKASDRFIPTWTPIDKRAKRVLSFATNGNGGQTNLVWSDKNSHT
LGRPY
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgatttctctgcacagattacttcaattccactccaatttcagctcgcgat
ttcctccgcctccccctttcgcctctcctcactgatccgaacacctccaaattcgaagac
cttaatttttctgacggagtttctactctcagtatcgatgtcgaaatcgagaaatttccg
atcgaggcagctctctccagcttcttcgccgatgtccttccgcacaacatcgatattgaa
ctctccgagttcgcagatcctcaacctttcgctagttgcagttccgaggtgcaaacaagc
gaaactacgaactcagaggggactattgtttcctacagcaaggggaaggaaaatcttgaa
atggtccaacttgaaattcgggtgctggatacatcctggcttccattgcttgaagacatc
ccttattttggaaaggagaatatgtcgattccctctcattcggatggtgaagataagctg
gatatgcccggtcttgaagtttggctgccagattcccctgagatcctgcaatcaatttgt
tcagtggatgacatctcttctgtggctttactggagaaaagtgctgatttgatggaagat
ggtgctttctgtcaggggcaatatcattctagtacatctgtctttcctcatcttgaagtg
gatgaggcaggtttggttattgtcagtgacaaatctgtaaaggagaaagttgcaagtatt
gaaaatattgagcttcactgtgagacgccaggaagtgaaggaatgggtagaagcaatgaa
cttttgggttccataaagtttgacacaatgcaatacctatcagatggtagtttcacaatg
ggcagttgtgaagttgaggttccgtgcttgaatttctctgcggagatggatttgataagt
attattgaacttgagaaaaacttggtgatccatgaaagcatagaaaatgatggtctaata
tgggtagcaagcccaatcatttttgatgaattgcagttctttgattcagaccttttttct
tttcatgaattccagtctgaagcaaaagtagatattgataaagatacatgtgacctgatg
ttgagagaagccgagaatttcaggaactttgacgaattgcttgtttcccatgagctcatc
cctgtggataattctttcagatcattgcctgtgccaccagttcctgagaatggaaatata
aagtcactgtacttgtgtattaaggaaatcctagctgagttggagctgcagtctccctcc
atgtccgatgggttatacttagattggccttttctggaagaagagaaatgcgagtatcga
gaagactgcttcaatttgttgagggatatagatgctaacgacattgccttttgcttgaac
ttcagtgacaatgagatgcttgtatcggactattttttctcaagtgatagtccacaagaa
ccaaacagagcggagagcaaggaaatgctgagtataccttctaatggcaatcctatatct
cccatcccttataacatagaagtgtcaactaagttgctgaatgatgggaagttcccaact
gaaggagtatcatcccaatgtattgctagaaaagcatcttcatttggtgactccaggtca
aagtttaatgatcttgattttttcttaaatcgaaaggagtatagtagaggcaaagattat
aaaccagctgacagttcaattgatactagtgccacggaccagatcagtttcctctcttct
tctgctaccacattattgcaacctcaatggaatatcaaggtgcatcaaatattgttatct
actgatattctacttctaattgattatcttaagaaaatctttctagctatctttgaaaga
cagagagagttagttgagattcaggatccatctcaagctgtggacgatgatgctattctt
cgccttccaaagaaaaagctcatcaatttaattaaaaaaagaggcatgtgcaggtcatct
ttgttccaggatggtgagaaaaccatgtcattagtcacattgtctgcaatcaaacagatg
gtttggtacctgtgctactatgatctgcattcaacctatctatacatagaaaagttatcc
aggagcttgcagggattggaatctaaacttgatttcatctacaacatcgtaaaagatgtg
catcagaagggtgaaaacgatatacataagttccatccatcgctatccgttatcaaggat
attctggagacatttaagagcaaggatagttcaaagatattaattgtggctgagccagtg
ttctggtggtcattgaaaaaactcttgacgtccatgaatattgcattttttcaacaacag
aatggacagaaggatgatttttacaaattagaagatgccagcatgcaaatgattcacgaa
tcagattgctgtttagtaacccatgagcatctgtttgcctcatttccatttgagaaattt
gagattatcttggaatatggaggttcacaagaatcatctaaagtatcttccatcttgcca
aagtcagatagagttcctccccttcatttccttaaggtggagctggaggaccccagtgtt
gcaaaagctctttgtgatggcgttgacatgtccaacattaatgaagctagtgtggaagga
ggtcctcacttttgctctactctcaatgagatggatgttacctttgaagaactgctaaat
taccttccagtggaaaagaacttgaagggtgggagcatggaggcattactgggaaatgaa
gcttgctctactgcagctgaagatgcagtattcagttcaaaatctaagcaaaattgcaga
agcatagatggctgtcctgagactatcgttatagttaacacacacaattttgacacggaa
atggtaatttcaaggagaagtacataccaaaagattcttgcatttgagaagaaaggagtt
caggtcatagagcgtgatttacgtcagcctgtcgatattatagttagtgcatcagcttgc
cttgcttggtatgactgcaaaaacattgcaaagaaagctactgcctccgacgaggctttc
tcttgcttgcctcagtgtgtcgagaatcttgcagcaaatattttgacgtcactcagtttt
gctttcagtggctgcactctggtctttgagggagaaagcgactttatagcaggaataatg
gagtcatctgatgagctctatgctgctgctgctagcttgggcatggatatacggatcttt
tattcatattcttctgagatgactgatgagatcatattatcgtgcattgaactttcattg
aggacaagcagaggactttttcctaagatgcatgagacacaaacgctggcagaatcattc
ctttctgcatttccttcaatcaatccactctcagctcatgcaatattgtcttcagcgggc
ttgcttgttgagtttctggaatggacacatgaacgcagaattcatgcagtccagaaatat
caggttcctgatgaaagcatcacattactgagtgctttgagcagatttggggagcgggag
gattctaaatcgggaatgacagattgctcctcttcagtttcttctgctccaggctctgaa
agtcttcattgtaaaagcaattctgtggggacgaaaagaaaaaccacctggaatactgaa
aatcttaatatgcctacaaatgagttgtttgattttgatccaccactaacattttctaaa
gacagaccgaatcatcccagagcatctggcctgtgcgattctcggatttcagaagatatc
gacttttttgatgaatttgggaattctagcttatcatttgacacagaattgtgtgttcaa
agacaatcattagacacctatgggacagaagatctttttaaggtaactgagctctgcgat
tatcagatgagaaaagatccacagatgggaaatgagttaaataaacttgaggctccacaa
tgtttgcgtccaagagagagagtttacgtgtgtatgatgaacaaattggatagaaaaaat
aactattcaggaaattttaaagaggatatcacagatgaggttattgatattgacgatact
cctgcaactagaaaagcttttcgtaatgcaaaatacaagtccttttctaccctggagcat
gcaatggaaaggtccaaaacaggggttcctaaagctgctaaaaaactcttttttggagca
agtggtctccaagaattcccaaccactgtggatattgactctagcccagatgcctgcact
tctgtgagaaaccacgggcaaggatcagggcaaggaatgggacaacatttaaatgcaggt
ttctatcataagaagagtcaaattaagcacaagaaaggtgtcacagaagagggtgtatct
gagaaagtaaattgtttgagtgacctgacagtgcaagacaataatacagcttgttatggc
gagacaccactctcaagcgcacgtcaatccactcgattgcagcaaggttcaccctggaca
attgaatttctgaacaaaatgagggaaaagagtcggtcacgtcagcagtttctcccacgt
gacctatcagccccttggcatggataccccggcaaatcatcagaagtcacaaatagaaag
agtccatctactattgaattttacaagtatcaaggaaacagttgccaagaggcagggacc
aggagaaagaggcctatgaaatgcatacagctaccagcatccactactgagaaggcttca
gatcgtttcattccaacgtggacacccattgataagagggcaaaacgggtgctatcattt
gcaacaaatggaaatggagggcaaactaacctggtatggagtgataagaactctcataca
ttgggtagaccatattaa
DBGET
integrated database retrieval system
