Nicotiana sylvestris (wood tobacco): 104229453
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Entry
104229453 CDS
T05026
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104229453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104229453
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104229453
mRNA degradation factors
5'-3' decay
Decapping complex
104229453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
104229453
NCBI-ProteinID:
XP_070007979
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All DBs
Position
7:87926032..87935248
Genome browser
AA seq
1410 aa
AA seq
DB search
MASSPGNPNQPGGSGPFDMHKFYKPNPNSPNPNPNQNPNLISSPFPPPNASYPPPTVAGA
GAGGVYPYPPQTTAAPFHHHHPQFNHPHLTPQYTTPLPQHDATQFAHQQRSMSFPXPPLQ
PPPPQPTSPHQFPNPNPGARLMALLSAPPSTLEIPPIQLTTSGSELSEFSSGPNVPGAGP
MRMASSKLPKGRHLNGDHIVYDIDVKLPSEVQPQLEVTPITKYGSDPGLVLGRQIAVNKT
YICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASIDGRVYIWKITE
GPDEEDKPQITGKIVIAVQIVGEGESVHPRVCWHCHKQEILVVGIGRRILKIDTTKVGKG
SVFSAEEPLRCPVDKLVDGVQLVGTHDREVTDLSMCQWMTTRLVSASVDGTIKIWEDRKP
LPIAVLRPHDGHPVNSVTFLAAPHRPDHIILITGGPLNREVKIWASASEEGWLLPSDAES
WRCTQTLELKSSAEAQAGEAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPVATRM
DYIAGFTVTMPILSFTGTSDLLPNGEQIVQVYCVQTQAIQQYALDLSQCLPPPTENVVFE
RTESGVSRDAASIEGSAPADPPRSKQQELPLSSSAPKSSVHESGFEISPTARHPSTAPTE
SAPSQELASSIIETKSSTFPTVTSDSDIAPIASPPPPLSPTLSRKLSGFRGPSNSFERGT
SDNEQVGDPKVVEYSVDRQKEGTTPNVSDVTSLDDEPKNDESKQSQNDVPSGISPPVKFK
HPTHLVTPSEILMARSSSEVNIVNEQKSESELNIQDVVINNDARNVEVDVKVVGEAIFSQ
KTDVGSQEELHSFVSENKEKAFCSQASDLGIEMARECRALSPETYTVEESRQFDGAGRSE
GPSQPSSTLEEDRDSAKETSEKDLDSTMSVTVHQAPAPTAKGKKQKGRNTQVSGPSSSSP
SVFNSTDSLNESGLSSSTPSVEAAFSQILSMREMLNQLLTMQKDTQKQMEMMVAVPVTKE
GRRLEAALGRSMEKSVKANSDALWARLQEECAKQEKSLRDRTQQMANLISNCLNKDMPGL
IEKLMKKELAAVGQAVARSITPTIEKTVSVAISEAFQRGVGDKAVNQLEKAVNSKLEATV
ARQIQAQFQTSGKQALQETLKSTLEASVIPAFEMSCKAMFEQVDLTFQKGIADHSAAAQQ
QFESVHSPLALALRDAINSASSMTQTLSGELADSQRKLLALAVSGANPQSANPLVSHMNN
GSLLHEKIETPPDPTKELSRLLAEHKYEEAFTAALQRSDVSIVSWLCSQVDLPGILSLNP
LSLSQGVLLSLLQQLACDISKETVQKLSWMRDVLTAINPTDPMIAVHVRPIFEQVYQILH
HRRSIATTPAAELSNIRLILHVINSMLMSK
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggcaatccaaaccagccaggtggttcaggaccattcgatatgcac
aaattctacaagccaaaccctaattcaccaaaccctaatcccaatcaaaaccctaattta
atttcctcccctttcccacctcctaacgcttcttaccctccacccaccgtcgccggcgcc
ggtgccggaggtgtgtacccgtatccacctcaaacgacagcagccccatttcaccatcac
caccctcaattcaatcacccccacctaaccccccaatacaccaccccactacctcaacat
gatgccacccagtttgctcatcagcaaagatccatgtctttccccnacccccctcttcaa
ccacccccaccccaacctactagtcctcaccaattccctaacccgaaccctggtgctagg
cttatggctttgttgagtgctcccccttctactcttgaaatccctcctatacaacttacc
acttctgggtcagagctctctgaattttcctctggcccaaatgtcccgggcgcgggacct
atgagaatggcgagcagcaagttgcctaaaggccggcatttgaatggtgatcacattgtg
tatgatattgatgttaagttgcccagtgaggtgcagcctcagctcgaggttactcctatt
acaaagtatgggtcggatccgggtcttgtattgggtcggcagattgcagttaacaaaact
tacatatgttatggattgaaattgggggctatacgggttcttaacattaatactgccttg
agatcgttgcttaaaggccttgcgcagagggtcacagacatggctttctttgcagaggat
gttcatctcttggctagtgcgagtattgatggccgggtttatatatggaaaattaccgaa
ggaccagatgaagaagataagccacaaattacaggaaagattgtcattgctgttcaaatt
gtgggtgaaggggaatctgtgcacccacgtgtttgttggcattgtcataaacaagaaatt
ctcgtggttggaatcgggagacgcattttgaaaattgataccactaaagtgggaaaaggt
tcagttttttcagctgaggaacctctcaggtgtcctgttgacaagttggttgatggggta
caacttgttggtacccacgatagagaagtgactgatttatctatgtgccagtggatgacc
acgcgtttggtatctgcttcagtggatggcacgataaagatatgggaagaccggaagccc
cttcctatagcagttctcaggcctcatgatggtcaccctgttaattctgttaccttcttg
gctgctccacatcgtccagatcacatcatactcatcactgggggtcctcttaatcgggag
gtaaagatatgggcttcagcaagtgaagaaggctggttgcttcctagtgatgctgagtca
tggcgctgtacacagacattggagctgaagagttcagctgaagctcaagctggagaggca
ttttttaaccaagttgtagccttatctcaagcaggtttacttctactagcaaacgcaaaa
aagaatgctatatatgctgtgcatctggagtatggcccaaacccggtggcaacccggatg
gattacatagcaggatttacagttaccatgccaattttgagtttcactgggacgagtgat
ctattgcccaatggtgaacagattgttcaggtgtattgtgtacagacgcaggccattcag
cagtatgctttggacttgtcccaatgcttgccacctccaacagagaatgtggttttcgaa
aggacggaatccggtgtttcccgtgatgctgctagcattgaaggatctgctcctgctgac
ccccctagaagtaaacagcaggagcttcctttatctagttctgcacccaaatcatctgta
catgaaagtggctttgagatatcaccaacagctagacatcctagtactgcacctactgaa
tcggccccctctcaagaattagcttcctccattatagaaactaaatcgtctacttttccc
actgtaactagtgatagtgacattgcccccattgcatcacctccgcctcctttgagtcct
acattgtctcgaaaactatctggttttagaggtccatcaaacagctttgagcgtggcacc
tctgataatgagcaagttggggatccaaaagttgttgaatattcagttgatcggcaaaag
gagggcacaactccaaatgtgtctgatgttacttccttggatgatgaacctaaaaatgat
gaatctaaacagtcacagaatgatgttccctcaggtatcagtcctcctgttaagttcaag
cacccaactcatttggtgactccttcagaaatattgatggctagatcatcctctgaggtt
aacattgttaacgagcagaaaagtgagtcagaattgaatatccaggatgttgtaattaac
aatgacgcccgtaatgttgaggtggatgttaaagttgttggtgaagcaatattcagtcag
aaaactgatgttggctctcaagaagaacttcattcttttgtgtcagaaaataaggagaaa
gccttttgctctcaagcatctgatcttggaatagaaatggctcgagaatgtcgcgcttta
tctcctgaaacctatactgtggaggaatctaggcagtttgatggggctggtagaagtgag
ggaccgtcgcaaccttcaagtacactggaggaagatcgtgactctgcaaaggagacctct
gaaaaggatctggactcaacaatgtcggtcactgttcatcaagcaccagctcccactgca
aaagggaaaaagcagaaggggaggaatactcaagtatctgggccgtcatcatcatcgcct
agtgttttcaattcaacagattctttaaatgagtctggtctcagctcaagtaccccttct
gtggaagctgctttctcacaaattctgtccatgcgtgagatgctaaatcagcttctgact
atgcaaaaagatacacaaaagcagatggaaatgatggttgctgtcccagtgaccaaagaa
ggaagaagacttgaggctgccctgggacggagcatggaaaaatctgtcaaggccaattct
gatgctttatgggctcgtttacaagaagagtgtgcaaaacaggagaagtctcttcgtgat
cgtacacaacaaatggcgaatttgatctctaactgcttaaacaaggacatgccagggctg
attgaaaaattaatgaagaaagaactagcagctgttggacaagctgtggcacgcagtatt
acccctaccattgagaaaactgtatcagttgcaatttcagaagcattccagagaggagtt
ggtgacaaggcagtgaaccaactggagaaagcagtaaactccaaacttgaagctactgta
gctagacaaatccaagcacaattccagacctctggcaagcaagctctgcaggaaacactg
aaatctactttggaagcttcagtgatccctgccttcgagatgtcatgcaaggcaatgttt
gagcaagtagatttaacattccagaaaggcattgctgaccactcggctgctgcgcaacag
caatttgagtccgtgcattccccgttggcacttgctctaagagatgccataaattcagcg
tcgtcaatgactcagacattgagcggagagctggctgatagtcagagaaagttgcttgct
ctcgcagtttctggagcaaatccccagtcagcaaatccgctggttagccacatgaataat
ggatcattgctgcatgagaagattgagacacctccagatccaaccaaagagttatctaga
ctgttagcggagcacaagtatgaggaagcattcactgcagcgttacaaagaagtgacgta
tcaattgtctcgtggttatgctctcaggttgatttgccagggattttgtccttgaatcct
ctctctctgagtcaaggagtgctcctttcacttcttcagcagttggcgtgtgatattagc
aaagagacggtccaaaaactatcctggatgagggatgtgttgactgccataaatccaact
gacccgatgatcgcagtgcatgtgcggcccatttttgagcaagtatatcaaatattacac
caccgcagaagtattgctacaacccccgctgctgaactttcaaacattcggctgattttg
catgtaatcaattcgatgttgatgagtaaatga
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