Nicotiana sylvestris (wood tobacco): 104229984
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Entry
104229984 CDS
T05026
Name
(RefSeq) uncharacterized protein
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nsy03016
]
104229984
Enzymes [BR:
nsy01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
104229984
Transfer RNA biogenesis [BR:
nsy03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
104229984
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
104229984
NCBI-ProteinID:
XP_070026745
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Position
3:4126826..4138791
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AA seq
625 aa
AA seq
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MEDIEDLLAGAGAGVPPGFRLPVPAAVGVNPKQRKKNGVTNKLTVVQDSSAPKIPGTQTI
YIKTFGCSHNQSDSEYMAGQLSAFGYALSDNPDEADLWMINTCTVKSPSQSAMDTLISKG
RSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPA
LDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVKNVIADGVREI
WLSSEDTGAYGRDIGVNLPILLNAIVAELPLDGSTMLRIGMTNPPYILEHLKEIADVLRH
PCVYTFLHVPVQSGSDSVLSAMNREYTVGEFRKVVDTLMELVPGMQIATDIICGFPGETD
EDFGQTVDLIKDYKLAQVHISQFYPRPGTPAARMKKVPSNVVKQRSRKLTAVFESFTPYT
GMEGKVERIWITDIASDGIHLVGHTKGYIQVLVIGPESMLGTSAMVKITSVGRWSVFGEV
IEIISHNNKEVGSHEKVDEKCSPCANSEEACACSKEQELGSSCGTTSCCSQSPMQETTTL
LKNEPKQDDQGSRNLIGWFLRNRKNHSSKKMDLAGLESKEKKQIQDLGRQSAWGPVDIAL
LSGILLSLFTIVALFLNLGSRSLSS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggaagacattgaagatttacttgcgggtgccggcgccggagtgcctccagggttccgg
ttaccggttccggcggccgttggagtcaatccaaaacaaaggaaaaagaacggtgtaacg
aataagctaacagtagtgcaagactcttctgcacccaaaatacctggcactcagactatt
tacatcaagacttttggatgttctcataatcagagtgattctgaatatatggccggtcag
ctttcagcttttggttatgctctgagtgataaccctgatgaggcagacctgtggatgata
aatacctgcacagttaaatctcctagtcaatctgccatggatactcttataagtaaaggc
agaagtgcgaaaaagccattggttgtagcaggttgcgttcctcaaggaagccgtaatctg
aaggagctagaaggagttagtatagtaggagttcagcagattgaccgtgtggttgaagtt
gtggaagaaactttgaaaggtcacgaagttcgtcttctaacccggaagacattaccagca
cttgatcttccaaaggtacgaaaaaacaagtttgttgagattcttccaataaatgttggt
tgtttaggtgcttgtacttattgcaagacgaagcatgcccgtggtcatttaggaagttac
acagttgacagccttgtgggccgagtaaaaaatgtcattgctgatggagtgagagagatc
tggctgagtagtgaagacactggagcttatggtcgtgacattggagtaaatcttcctatc
ctattgaatgctatagttgcagagcttcctttggatggaagtacaatgctccgaattggg
atgaccaatcctccttatattctcgagcacctgaaggagatagctgatgtcttacgccat
ccatgtgtgtatacttttcttcatgtgccagttcagtcgggtagtgattcggtcttgagt
gcaatgaatcgtgaatacactgtgggtgagttcaggaaggtggtggatacattaatggaa
ctggtccctgggatgcagattgcgacggatattatttgtggatttcctggtgaaactgat
gaagattttggtcagaccgttgaccttattaaggactacaagttagctcaagttcatata
tcacagttctaccctaggcctggcactcctgctgcaagaatgaagaaggttcctagtaat
gtggtgaagcaacggagccgtaagttaaccgctgtattcgagtcctttactccatatact
ggaatggaaggcaaagtagagaggatatggattactgacatagcttcagatggaattcac
ttggtgggtcacactaagggatacattcaggtgctggtgattggtccagaaagcatgctg
ggtacctcagctatggtgaagataacatccgtaggtagatggtcagtcttcggagaagtg
atcgagatcatcagccacaataataaggaagttggttcacatgagaaagttgatgaaaag
tgctccccatgcgccaattcagaagaagcttgtgcctgttcaaaagagcaagaacttggt
tcttcttgtggaacaactagttgctgcagtcaaagtccaatgcaggaaacaacaacactg
ctgaagaatgaaccgaagcaagatgatcaaggtagcagaaacttaattggatggtttcta
aggaatcgtaagaatcattcttccaaaaagatggacttggccgggttagagtccaaggag
aagaagcaaatacaggatttaggtcgccagagcgcttggggtcctgttgatatagctctt
cttagtggaatattattgagcttgttcacaatagtagctctatttttgaatcttggatct
aggagtttgtcatcttaa
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