Nicotiana sylvestris (wood tobacco): 104230117
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Entry
104230117 CDS
T05026
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nsy03009
]
104230117
03036 Chromosome and associated proteins [BR:
nsy03036
]
104230117
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104230117
Ribosome biogenesis [BR:
nsy03009
]
Eukaryotic type
Pre-60S particles
Helicases
104230117
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104230117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
FlpD
Motif
Other DBs
NCBI-GeneID:
104230117
NCBI-ProteinID:
XP_009781160
UniProt:
A0A1U7X3V7
LinkDB
All DBs
Position
3:123572812..123577757
Genome browser
AA seq
682 aa
AA seq
DB search
MPALVVSETMGSEEPKELKKKMKKSEKGSSADTLKKSKKTKIDSGSDSEELKKSKKKDKK
RKYLNLDDEEDDDSSEILEPSNLNGDDKKKKAKLVENDDDEEKKEEKEEDPNALSNFRIS
VPLREALIAKGIQALFPIQAMTFDTIFDGNDLVGRARTGQGKTLAFVLPILESLTNGPTK
ASRKTGYGRAPCVLVLLPTRELALQVFADFEVYGRTVGLTSCCLYGNSPMGQQQVQLKRG
VDIVVGTPGRVKDHIERGNIDFRSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASQVQT
LLFSATLPSWVKHISYKFLKPDKKTADLVGDEKMKASKNVRHIIIPCSSSARTQLIPDII
RCYSSGGRTIIFTETRGYASELAGLLPGARALHGEIQQSQREVTLSGFRSGKFLTLVATN
VAARGLDIDDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKKSNISRIERES
GVKFEHLSAPQPADVAKAAGKEAAEAVAEISDSVIPAFKAAAEELLNTSELSPAELLAKA
LAKAAGYSEIKTRSLLSSMENCVTLLLECGRPIFAPSFAYNVLRRFLPEDKVESIKGLTL
TADGKGAVFDVSADDLDMFLAGKNTQGVNLEVVKELPRLQEKDQARGGRFGGGRGGFYDR
RGGGRFSGGRGGRGRGNFGRRW
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcacttgttgtaagtgaaacaatggggtctgaagagccgaaagagctgaagaag
aagatgaagaagagcgaaaaagggtcatccgccgacacccttaaaaagtcgaaaaagacc
aagattgattctgggtctgattcagaagagcttaagaagagtaagaagaaagataagaag
cgaaaatatttaaacttggatgatgaggaggacgatgatagttcggagatactggagccg
agtaatttgaatggggatgacaagaagaaaaaggctaaattggtggagaatgatgatgat
gaggagaaaaaggaggagaaagaggaggatcctaacgctttgtctaattttaggatttct
gtgcctttaagagaggctttgattgctaagggtattcaagcgctctttcctattcaagct
atgacttttgataccatctttgatggaaatgacttagttggtcgagctcgcactggtcag
ggtaaaacattggcctttgtgttgcccatattggagtccctgacaaatggtcctactaaa
gcgtctcggaaaacagggtatgggagggctccttgtgttttggtgcttttacctactagg
gaattggcacttcaggtgtttgctgactttgaagtttatggtcggaccgtggggcttact
tcatgttgtttgtatggaaattctccaatgggacaacaacaagtgcaattgaaacgagga
gttgatattgttgtgggtactcctggaagagttaaggaccacattgaaagaggaaatatt
gatttcaggtctctaaagttccgtgttcttgatgaagttgatgaaatgctgaaaattggt
tttgttgatgatgtggaatttatattaggcaaggtagaagatgcaagccaagttcaaaca
cttcttttcagtgccactttgccaagctgggtgaagcatatatcttataagtttctcaaa
cctgataagaaaacagctgatcttgttggtgatgagaaaatgaaggccagtaagaatgtg
agacatatcattataccatgctctagttcagccagaactcagctgattcctgatattatt
cgctgctacagcagtggtggccgcactattattttcactgaaacaaggggttatgcttct
gagctagccggcttattgccgggagcacgtgctttgcatggagagatacaacagtcccag
cgtgaggttacactctctggattcagatcaggaaaattcctgacattagtggcgacaaat
gtagcagcccgtggattggatattgacgacgttcaattaattattcagtgtgagcctcca
cgcgacgtcgaagcgtatattcatcgatctggaaggacaggaagggcaggaaatactggt
gtggcggtaatgctttatgatcctaagaagtccaacatttctaggattgaaagagaatct
ggtgtgaagttcgagcatctatctgctccacagcccgctgatgttgctaaagcggctggg
aaggaagcagcagaagcagttgctgaaatttctgatagtgtaatacctgctttcaaggct
gctgctgaggaacttctaaacacctctgaactatcaccagcagaattgcttgccaaggca
cttgccaaggcagctggctactctgagatcaagactcggtcgcttctttcttccatggag
aactgtgttactctacttctcgagtgtgggaggcccatatttgcaccttcctttgcatat
aatgttttgcggaggttcctaccagaggacaaggttgaatcaatcaaaggtcttactttg
acagctgatggaaagggcgcggtttttgatgtatctgctgatgacctggatatgtttcta
gcagggaagaatacccaaggtgtaaacttagaggtagtaaaagaactgcctcggttgcaa
gagaaagaccaggcaagaggtggaagatttggtggtggtcgtggtggcttctatgacagg
agaggtggtggtcgcttttccggaggcagaggtggaagaggtcgcggaaacttcggccgt
agatggtga
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