Nicotiana sylvestris (wood tobacco): 104231979
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Entry
104231979 CDS
T05026
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy00040
Pentose and glucuronate interconversions
nsy01100
Metabolic pathways
Module
nsy_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
104231979
Enzymes [BR:
nsy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
104231979
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
DUF3737
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
104231979
NCBI-ProteinID:
XP_070009434
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Position
8:complement(180150406..180157047)
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AA seq
405 aa
AA seq
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MVCWRTPDRAFIFLICITPFILDRSLAAVFDITSYGAVGDGKHDDTQAFKQAWAAACRGD
SRNPSMFIPSGKSFLIRPITFQGPCKSSNIHLQVSGSIVAPEDPKEWKGCENVSWIYFTG
VFGLFINGSGTINGNGQRWWKTHSGIRVNGTCTKPTAVHFNYCNGLQLSGIKLVNSSRNH
ISLTYSKGVTISKIHISAPKYSRNTDGIDISNSSQLHIQDSTIQTGDDCIAINTGCVDVH
ISGISCGPGHGISVGSLGPDNTYAYVDNVYVTNCNLEGTQNGVRIKTWQGGSGYARSIHF
EDIHLKNVENPIIIDQFYCNGGHSCQPQVSAVKISDITYKNIHGSTSSKAAINLNCSNST
ACTNIEMENINITPVVPGQKIFAICNNAKGKASSTSPPVPCLDKY
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggtttgttggcgtactccggatcgagctttcatctttttgatctgtattactccattt
attcttgatagaagtcttgctgctgtttttgatataacaagttatggcgctgttggagat
ggaaagcacgacgacactcaagcattcaaacaagcttgggcagctgcgtgtaggggtgac
agtagaaatccgtcaatgtttataccaagtgggaagtcatttttaatacgaccaattaca
ttccaaggaccttgcaaatcctccaatattcatctacaagtatcaggatcaattgtagca
ccagaggatccaaaggaatggaaaggttgtgaaaatgttagttggatatattttacaggt
gtttttggtctcttcatcaatggttctggtactatcaatggcaatggtcaacgttggtgg
aaaactcatagtggtatcagggtgaacggaacttgcactaaaccaacagctgtccacttt
aattattgtaacggccttcaattgagtggaattaagctagtgaatagttcgagaaatcat
ataagcctgacttacagcaaaggagtaaccatctcaaaaattcatattagtgcaccaaaa
tatagtcgcaatactgatggtattgatatctctaactctagccaacttcacattcaagac
tccactattcagacaggtgatgactgcattgccatcaatactgggtgcgttgatgttcat
atttctggtatttcatgtggaccagggcatggtataagtgtgggaagcttaggtccagat
aacacatatgcgtatgttgacaacgtctatgtaacaaattgtaaccttgagggaacccag
aatggtgttagaattaagacatggcagggtggttctgggtatgctaggtctatacatttt
gaagatattcacctcaaaaatgtagaaaaccccatcattattgatcagttttattgcaat
ggaggtcattcatgtcaacctcaggtaagtgcagtgaaaataagcgatataacatacaag
aatatacatggaagtacaagcagcaaagcagcaataaatttgaactgtagcaatagcaca
gcttgcaccaacattgagatggagaatatcaacataactccagttgtccctggacaaaag
atttttgctatttgcaataatgccaaaggaaaagcctcttcaacttcacctcctgtacct
tgtttggataaatattag
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