Nicotiana sylvestris (wood tobacco): 104231980
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Entry
104231980 CDS
T05026
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
nsy03015
mRNA surveillance pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104231980
09122 Translation
03013 Nucleocytoplasmic transport
104231980
03015 mRNA surveillance pathway
104231980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104231980
03041 Spliceosome [BR:
nsy03041
]
104231980
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104231980
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104231980
Spliceosome [BR:
nsy03041
]
Complex C
Other components
EJC/TREX
104231980
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104231980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104231980
NCBI-ProteinID:
XP_009783372
UniProt:
A0A1U7WXP2
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All DBs
Position
8:complement(180159044..180166935)
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AA seq
428 aa
AA seq
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MGENKENDAYEEELLDYEEDDEKLPDSVTGKVNGDSAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaacaaggagaacgatgcatatgaagaggagctgctcgactatgaagaagat
gatgaaaaactccctgattccgtcaccggaaaagtcaacggcgattccgccaaaaagggt
tatgttggtattcacagttcgggtttcagagattttcttctaaagccagagctattgcgg
gctattgtggactctgggtttgagcatccttccgaagtgcaacatgagtgtattccacaa
gctattctgggaatggatgttatttgccaagctaaatctggaatggggaaaaccgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccctgatt
ctctgtcacactagggaattagcttatcagatctgtcatgagtttgagaggttcagcaca
tatctgcccgatatcaaggttgctgttttctacggtggtgtcaacatcaaactccacaag
gagctgctgaagaatgagtgtccgcatattgtcgttggaactcctggaagagtacttgca
ttggcaagagacaaggacctgtctttgaggaatgtgaggcattttatactagatgagtgt
gacaagatgcttgaatcacttgacatgaggagagacgtgcaggaaatcttcaaaatgact
cctcatgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtt
tgcaagaaattcatgcaagatccaatggaaatttatgttgacgatgaggccaagttgacc
ctgcatggacttgtacagcactacatcaaattgagtgaaactgagaaaaacaggaagctg
aatgacctgttggatgctttggacttcaaccaagttgttatttttgtcaagagtgtgagc
agagctgcagagttgaataagttacttgtggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagactgacacgctacaagggtttcaaggaagggcacaag
agaattcttgtggcgactgatttggttgggagaggcatagacattgaaagggtgaacatt
gtcattaactatgacatgccagattctgcagatacttaccttcacagagtgggaagagct
ggtagatttggaaccaaaggccttgccataacatttgtgtcctctgcatcagattctgat
gttctcaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagatt
gacacttctacatacatgccatcttag
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