Nicotiana sylvestris (wood tobacco): 104233160
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Entry
104233160 CDS
T05026
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104233160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104233160
Spliceosome [BR:
nsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104233160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
PRP4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_Vps41
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
Beta-prop_SPT8
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
104233160
NCBI-ProteinID:
XP_009784800
UniProt:
A0A1U7XEB7
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All DBs
Position
4:1678676..1686209
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AA seq
576 aa
AA seq
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MDAEEEIPASTAEPSTLVGDNSTVVNAIGAINLQPVPPVTPPVAPTVILPAVVPAIAPTP
AVPTPIPPPLAPLPVRPPVLRPPVAQNGEVQASDSDSDEEMGSDRGTGGSVQEYEISEES
RIVRERQEKAMQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRML
MARLDAEGQLEKLMKAHEDEEAAASAAPAEEEDIQYPFYTEGSKALLDARVEIAKYSLVK
SALRLHRARRKRNDPDEDVDAEVDWALKQAGSLALDCSEIGDDRPLWGCSLSHDGKMLAT
CSLSGIAKLWSMPQVQKLSTLKGHTERATDVVFSPTSNYLATASADKTAKLWNSEGSLLR
TFEGHLDRVARIAFHPCGKYLGTASFDKTWRLWDVESGEELLLQEGHSRSVYGLSFHHDG
SLVASCGLDALVRVWDLRSGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIWDLR
QRKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDTTAKVWSSRDFKPVKTLSGHEAKVTS
LDVAGDGQHIVTVSHDRTIKLWSGKNIEKEEKMDTD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgaggaggaaattcctgcttcaactgcagaaccttcgactctagttggtgat
aattcgactgtggttaatgctataggagcgattaaccttcaaccagttccacctgtcact
ccgccggttgctccaacagttatccttcctgcagttgtgcctgcaattgctccaacgcct
gcagtccctacccccattcctcccccattagctccattgcctgttcgtccacctgtcctt
aggcctccagtagcacagaatggagaagtgcaagcgagcgattcagattctgatgaagaa
atgggatctgatcgtggtactgggggctcagtccaagaatatgagatatctgaggagagc
agaatagtaagggagaggcaggagaaagccatgcaggagcttctgatgaagcgacgtgca
gctgcgctagctgttcctacaaatgatatggcagttcgagctcgccttcggcggcttggt
gagcctataactctctttggcgaaagggagatggaaagaagggaccgtctgcggatgctt
atggcgaggcttgatgcagaaggacagctggaaaagctgatgaaagcgcatgaggatgaa
gaagctgcagcttctgctgcaccagcagaggaggaggatattcagtaccccttctacact
gaaggatcaaaagcacttttagatgccagggtagaaattgcaaagtattctttagttaag
tcagcattacgtctccaccgtgcaaggaggaaaaggaacgatccagatgaagatgtggat
gcagaggttgattgggctttaaagcaagcagggagcctcgcccttgattgcagtgaaatt
ggagacgatcgacccctttggggatgctcgctttcacatgatggaaagatgcttgctacc
tgttctctgagtggaattgcaaagttatggagtatgcctcaagtgcaaaagctttccact
ctaaagggtcacactgaacgagctactgatgttgtgttctctccaacaagcaattattta
gctactgcatctgctgataagactgcaaagttatggaactcggaagggtctcttctcagg
acatttgagggacatttggaccgtgtagctcggattgccttccatccttgtgggaagtac
ttgggcacagctagctttgacaaaacttggagattatgggatgtagaaagtggtgaagag
ttgcttttgcaagaaggtcacagtaggagtgtgtatggattgtcgtttcaccatgatggt
tcattggtagcatcatgtgggctggatgcacttgttcgagtgtgggatttaaggagtgga
cgaagtattcttgctctggaaggtcatgtaaaaccggttctgggtgtcagcttttctccc
aatggttatcatttggcaagtggtggtgaagataatacatgccgtatttgggacttaagg
cagagaaaatctttgtacataattcctgctcactccaatcttatttctcaagttaaattt
gaacctcaggagggatactttttggttacagcgtcctatgatacgacggctaaggtatgg
tcatcaagggatttcaaacctgtgaagacactatctggtcatgaagcaaaagtcacgtca
ttggatgtagcgggagatgggcaacacattgtcactgtatctcatgatcgaacaatcaag
ctatggtcaggcaaaaacattgagaaggaagagaaaatggataccgactag
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