Nicotiana sylvestris (wood tobacco): 104233824
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Entry
104233824 CDS
T05026
Name
(RefSeq) uncharacterized protein isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nsy03009
]
104233824
03012 Translation factors [BR:
nsy03012
]
104233824
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104233824
5.6.2.5 RNA 5'-3' helicase
104233824
Ribosome biogenesis [BR:
nsy03009
]
Eukaryotic type
Other ribosome biogenesis factors
104233824
Translation factors [BR:
nsy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104233824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
Viral_helicase1
AAA_19
DEAD
AAA_25
nSTAND3
AAA_22
AAA_16
AAA
ResIII
UvrD_C_2
RuvB_N
AAA_33
ABC_tran
PIF1
ATPase
UvrD-helicase
PhoH
NPHP3_N
IstB_IS21
AAA_7
NTPase_1
Zot
NB-ARC
TsaE
cobW
Sigma54_activat
DUF2786
Mg_chelatase
AAA_24
AAA_18
SRP54
Motif
Other DBs
NCBI-GeneID:
104233824
NCBI-ProteinID:
XP_009785579
UniProt:
A0A1U7XF54
LinkDB
All DBs
Position
3:complement(15971470..15981545)
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AA seq
652 aa
AA seq
DB search
MEKGKSNTKKNKSSSSTAMTLDQFVSTMAPLLDLEKEAEISLSMSSAETRSLDSAQKKGS
TILNLKCADIQTGLMGKTLMELQSTKGDILPPHKFGTHDVVVLKPNKADLGSPALGQGVV
YRLKDSSITVAFDDVPEEGLNNPLRLEKLANEVTYRRMKDTLIQLSKGVLKGPASDLVPV
LFGERPPTMSKKDVNFTPFNRNLDHSQKDAISKALSSKNVILLHGPPGTGKTTAVVEIIL
QEAKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARMLPQVLDSALDAQVLRGDN
SALANDIRKEMKTLNGKLLKAKDRNAKRDIRRELKALSKEERKRQQLAVTDVLKNADVVL
TTLTGALSKKLDGMSYDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTIQSVEA
EKKGLGKTLFERLADLYGDEITSMLTVQYRMHELIMNWSSGELYDNKIEAHSSVASHMLY
HLEDVKKTPSTESTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAIAHAKRLVESGVRASD
IGLITPYAAQVVFLKKLKSNEDKLKEMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLS
DRRRMNVAVTRARRQCCLVCDTETVSGDKFLKRLIEYFEEHGEYLSASEYGN
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagggaaaagcaacaccaagaagaacaagtcatcatcttcaactgccatgact
ctcgaccaattcgtttccactatggcccctttactagatttggaaaaggaagctgaaata
tcactttccatgagctcagctgagacgaggagtttggattctgctcagaagaagggctcc
actattcttaatttgaagtgtgctgatatccagacagggctaatgggcaagacactgatg
gagcttcaatcaaccaaaggggatattcttccgcctcacaagtttggcactcatgacgtt
gttgttctgaaaccaaacaaagctgatttaggctcccctgcacttggacagggggttgtc
tacaggctaaaggactcatctattactgttgcttttgatgatgtcccggaagagggtctg
aataatcctttacgccttgagaagttggcaaatgaggtgacctaccgtcggatgaaggac
acattgatacaactgagtaaaggtgtgctgaagggccctgcctctgacttagttcctgtt
cttttcggggagagaccaccaacaatgtctaagaaggatgtcaatttcactccttttaat
cgcaaccttgatcactctcagaaagatgccatctcaaaggcgctttcatccaagaacgta
attttgctgcatgggcctcctggaactgggaagacaactgctgttgttgagattattttg
caggaagcgaaacgtggttcaaagatccttgcttgtgctgcttcaaatattgctgttgat
aacattgttgagagacttgttccacacagagtgaagttggtgagattgggacatccggca
cgtatgctcccacaagtactggatagcgctcttgatgcccaggtcctacgtggtgataat
agtgctcttgcaaatgacatccgcaaggagatgaagacattgaatggaaagttattaaaa
gctaaagatagaaatgcaaagagagatatcaggagggagctcaaggctctttcaaaagaa
gagcgtaaaaggcagcagctagcagtaacagatgttcttaagaatgcagatgtagtcctg
acaacattgactggggcattgtccaagaagttggacggcatgtcatatgatttggttatt
attgatgaagctgctcaggcattggaaatagcatgctggattgctttattgaagggatca
aggtgtatattggctggagatcatctccagcttcctccaaccattcaaagtgtagaagct
gagaagaaaggactgggaaagacgctttttgaacgtttagcagatttatatggagatgaa
atcacgtctatgctcactgttcagtaccgcatgcatgaactgattatgaactggtcatcc
ggagagctgtatgataataagattgaagcccattcaagtgttgctagccatatgttatat
caccttgaggatgtgaagaaaacaccttccactgaatcaacccttctgctcatagacata
gctgggtgtgacatggaagaaaaaaaggatgaggaagatagcacattgaatgaaggtgaa
gctgaggttgccattgcccatgcaaagagactagtcgaaagcggagtccgagcttctgat
attggattaatcactccttatgcagcacaggttgttttcttgaaaaagctcaaaagcaat
gaagacaaattaaaagaaatggagatctcaactgttgatggtttccagggtcgagaaaaa
gaagccattatcatttctatggtccgatcaaactcaaagaaagaggtgggatttcttagt
gacagaaggagaatgaatgttgctgttacacgagcaaggagacagtgctgtcttgtatgt
gatactgagacagtcagtggtgataaattcttgaagaggttgattgagtactttgaggag
catggtgaatatttgagtgcttcggagtatggaaattaa
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