Nicotiana sylvestris (wood tobacco): 104234175
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Entry
104234175 CDS
T05026
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
nsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104234175
03015 mRNA surveillance pathway
104234175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104234175
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104234175
mRNA cycle factors
P-body specific factors
104234175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
104234175
NCBI-ProteinID:
XP_009786002
UniProt:
A0A1U7X1I5
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Position
7:complement(95901474..95916232)
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AA seq
469 aa
AA seq
DB search
MKNRRTKVVVRHLPPTLSQSTLLEQVDSRFAGRYNWFTFRPGKTSLKHQSYSRAYIDFRN
TEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKHWSKKDAREATILKDPEYLEFL
EFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARRSISNGRS
TKRVGGTSSRTPSSAASKRGSEKRTSTTMYVLRDSSKAGNGKDKSYILVPKRDDQQLSDK
SRTSAPGSGIDLVEGEIGRSVTADSGKKKILLLKGKEKEGPNVSGGSLAQQNVASTLKNS
PSSSAPKQNQRQEASGRIIRSILLKDARQNQSASQSEHQIQDKDKRPPRPPSMQLFQKDT
SGANEDKAAGNDLHVVHVEKQERRSRNRDRPDRGVWAPLRRADSSQASNEQSSQVRDFVE
GNYKHGSRRGLRDADGPSVGDGKPVRRGGTSAYSSLEKQVWVQKSSSGS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatcggcgaaccaaagtggttgtgcggcacttgccgccgacgctttctcagtct
acgcttctcgagcaggttgattctcgcttcgctggtcggtacaactggttcacttttcgc
cccggcaagaccagcctgaagcatcaaagctattcaagagcctatattgactttagaaat
acagaagatgttattgagttcgctgagttctttgatgggcacgtgtttgtgaatgagaaa
ggcactcagttcaaaacaattgtcgagtatgctccttcacagcgtgttccaaagcactgg
tccaagaaggatgcccgtgaagcgaccatactgaaagatcctgaatatctggagttcctt
gaatttcttgcaaagcccgttgagaatcttccaagtgctgagatacaattggagagaaaa
gaggctgaacgagctggctcagcaaaggatgctcctatagttactccattaatggattat
atacgtcagaaaagagctgcgaagagtggagctcggagatctatatctaatggaagatca
accaaaagggttggtggcacatcctcaagaactcctagctcagctgcatctaaacgaggc
tctgaaaagaggacttctacaaccatgtatgttctacgagacagttctaaggctggaaat
ggtaaggacaaatcatacattctagtgccaaaacgtgatgatcagcagctctctgacaag
tcgagaacctctgctcctggatctgggattgatttagtggaaggggaaattggtcgttct
gtaactgctgatagtgggaagaagaaaatcctgctcttgaaggggaaggaaaaagaaggt
cctaatgtttctggtggttcattagctcaacagaatgtggcatctactctcaagaattca
cctagttcatctgctccaaaacagaaccagcgccaagaggcaagtggcaggatcatcaga
agtattcttctcaaggatgctcggcagaatcaatcagcatctcagtcagagcatcaaata
caggataaggacaagagacctcctcggccaccaagtatgcagttgtttcagaaggatact
agtggagctaatgaggataaggccgctggaaatgacttgcatgttgtccatgttgagaag
caagaaagacgttctaggaatagagataggcctgatcgtggtgtttgggctcctcttcgc
cgtgctgatagttcacaggccagtaatgaacaatcttcccaagtgcgagattttgttgaa
ggtaactataaacatggtagtcgtcgtggtttgagggatgcagatggaccttctgttggg
gacggaaaacctgtgagaaggggaggtacttctgcctacagttctcttgagaaacaagtg
tgggttcaaaagtcaagttctggttcttag
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