Nicotiana sylvestris (wood tobacco): 104234601
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Entry
104234601 CDS
T05026
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy04120
Ubiquitin mediated proteolysis
nsy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104234601
04120 Ubiquitin mediated proteolysis
104234601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nsy04121
]
104234601
Enzymes [BR:
nsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104234601
Ubiquitin system [BR:
nsy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104234601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_11
zf-ANAPC11
zf-RING_16
FlxA
zf-RING_5
zf-C3HC4_4
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
104234601
NCBI-ProteinID:
XP_009786500
UniProt:
A0A1U7X2Y7
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All DBs
Position
6:77650758..77659729
Genome browser
AA seq
483 aa
AA seq
DB search
MMRLQTYAGLSVIATLAAIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMALAIMCILWQL
TKKVFLGTLRETEAERLNEQSWRELMEILFAITIFRQDFSVMFLAMVTGLLFIKSLHWLA
QKRVEHIETTPAVTKLSHIRIVSFMGFLLLIDSIFLYNYMNHLIQTRHASVSLFFAFEYM
ILTTTTVATFVKYVFHVCDMLMEGQWERKAVYTFYLELIRDLLHLTMYMCFFLMIFINYG
VPLHLIRELYETFRNFKSRVADYIRYRKVTSNMNDLFPEATPEELNGGDTICIICREEMT
TAKKLVCGHLFHVNCLRSWLERQHTCPTCRALVVPPENGTNVAGSRYAQQGPGTSFTPQG
SQADPRTNSHVSQHQARLQAAAAAAAIYEKSIVYPSAQMLPCYLGANMPFGDSSWNNLST
SDTQLEAHRISLQQQIEILRSQLTLLQSSKTQRAAAAVGASDGKGKAISFESAQKGQAEG
ADI
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgatgagactacaaacttatgcggggcttagtgtaatagctacactagctgctatttat
catgccttcagcagtagaggccagttttacccagcaatggtttatttatcgacatctaag
atcagtctggtgcttctcctcaacatggctctcgccattatgtgcattttatggcaacta
accaagaaagttttccttggtactcttcgggagacagaggcggagaggctaaatgaacaa
tcatggcgggaactcatggaaatactttttgcaattactattttccggcaagacttctct
gtgatgtttcttgccatggttaccggcctattgtttatcaagtctttgcattggttggct
cagaaacgggttgagcatattgaaacaactccagcggttactaagttgtcccacattcga
atagtctctttcatgggcttcctcctcctcattgatagtatctttttgtacaactacatg
aaccatttgatacagacaagacatgcttctgtttctctcttctttgcatttgagtacatg
atactcactacaacaactgttgcaacattcgtgaaatatgtattccatgtatgtgacatg
cttatggaaggacaatgggagaggaaggctgtatatactttctacttggagcttattcgg
gacttgctccacttgactatgtacatgtgcttcttcctcatgattttcatcaattatggt
gtgcctctgcacttgattcgggaactttatgagacattccgcaacttcaagagtcgagtt
gctgactacatacgctatcgaaaagtcacctcaaacatgaatgatctttttccagaggct
acaccggaagagctcaatggaggtgataccatctgtatcatttgtcgtgaggagatgacc
actgccaagaaacttgtttgtggacatctctttcatgttaattgcctccggtcatggcta
gaacgtcagcacacatgtcctacatgcagagcccttgttgtaccacctgaaaatgggacg
aatgttgcaggatctcgatatgctcagcaaggcccaggaacaagttttacacctcaaggt
tctcaagcagatcccaggacaaacagccatgttagccagcaccaggctagactccaagct
gcagcagcagctgctgcaatttatgagaagtccattgtttatccttctgcacagatgcta
ccctgctatcttggtgctaacatgccttttggagatagttcttggaacaaccttagtact
tcagatactcaactcgaggcccataggatatccttacagcagcagattgagattctgcga
agccagctcacgcttctacagagttcaaagacacagagagcagctgctgcggtaggagct
tcagatggcaagggaaaagcaatttcgtttgagagtgctcagaaaggacaggctgaaggt
gcagatatttaa
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