Nicotiana sylvestris (wood tobacco): 104234935
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Entry
104234935 CDS
T05026
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104234935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104234935
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104234935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
Zn_ribbon_RanBP
MMR_HSR1
GTP_EFTU_D4
Vps36-NZF-N
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
104234935
NCBI-ProteinID:
XP_070027500
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Position
3:complement(205116408..205141703)
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AA seq
723 aa
AA seq
DB search
MPRKVNYGVNYEEDFDDYEDYGYDYDDGYGYAEEDGTPPETRSKQELVNAGVWRCPICTF
DNEDTMNACDICGVLRHPLVEKCRVDGSHAVGGICKDSGASVMAKSLFASLLLQKPKKAV
NFEAQNYSFKTEDCFNLYKPGNMCGQFHDLHRAFCSQSHCKIDIVPFKFDSQSPDDSVLS
GIIPSRLRPKVDTDKVLQLNVPSNSKELSTEVKKDLAAEAHPSSYTSLAKDDLKNSDSSS
KTRGNDGVTSSLNMSISSKPRSVDTGKSDSATSSSKNKPQKSVQPPRIKDNFNQLNLAIV
GHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM
TVGVAYFNTKCYRVVLLDSPGHRDFVPNMISGATQADAAILVIDASVGAFEAGIDATGGQ
TREHAQLIKSFGVDQIIIAVNKMDAVGYSKERFNAIKKQLGTFLRACKFKDSSVAWIPVS
AMENQNLVTGPAEAQLSSWFQGPCLLDAIDSLQLPQRDYSKPFLLPICDVVRAQSQGQVS
ICGKLERGALQTGNKVLVMPSREMATVRSLECDSQVCNSAKAGDSVTINLQGIDANHVME
GGVLCHPEFPVPVANHLELKVLILDNSIPILIGSQLEFLVHHAKEAARVVRILSLLDPKT
GKETKKSPRCLLAKQNAIIEVVLQGMVCIDEHSNCKALGRVSLRSSGRTVALGLVTRMIG
KKE
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggtaaattatggagttaattacgaggaagattttgatgactatgaagat
tacggttatgactatgatgatgggtatggttatgcagaggaagatggtacgccaccagaa
acaaggtcaaaacaggagttggttaatgctggggtttggcgttgtcccatttgcacattt
gataatgaagatactatgaatgcatgtgatatatgtggagtccttcgtcatccattggtc
gaaaaatgcagagtagatggttcccatgcagttggtggcatatgtaaagattctggagca
tctgtaatggccaagtctctgtttgcttcactgctgcttcagaaaccaaaaaaggctgta
aattttgaagcacagaattactcttttaagaccgaagactgctttaacctctacaagcct
ggaaatatgtgtggacagtttcatgatttacacagagctttttgttctcaaagccattgc
aagattgatatagtacctttcaagtttgactcccagtctccagatgattcagtactgagt
ggaataataccatccagattacgtcccaaagttgatactgacaaggtcttacagttaaat
gtcccatcaaatagcaaagaactaagtactgaagttaaaaaagatttggctgctgaagcg
catccaagctcatacacatcattagcaaaagatgatttgaagaatagtgattcttcctcg
aaaactaggggaaatgatggtgttacaagcagcttgaacatgtctatatcatcaaagcct
cgcagtgtggatactggaaagagtgacagtgcaacatcaagctcaaagaataagcctcag
aaaagtgtacagcctcctcgaataaaagataacttcaaccagctaaatcttgcaattgtt
ggccatgtggattctgggaagtcaacgctgtcaggaaggttgctacatcttttggggcgg
atatcccagaaagaaatgcacaaatatgaaaaagaggccaagctacaaggaaaagggtcg
tttgcttacgcttgggcattggatgagagtgctgaagaaagagagaggggaataactatg
acagtgggcgttgcctacttcaacacaaaatgttaccgtgttgttctgcttgattcccca
ggtcacagggactttgtcccaaatatgatatcaggggcaacacaagcagatgcagcaatt
cttgtaattgatgcttcagtaggtgcatttgaagcaggtattgatgctactggaggtcag
acgagggagcatgcacaacttatcaaaagctttggggtggatcagattataattgctgtt
aacaaaatggacgcagtgggatactccaaagaacgatttaatgcaattaagaaacaatta
ggcacatttctccgtgcttgtaagtttaaagattcttcagtagcatggattcccgtaagt
gccatggaaaaccaaaatttggtgacaggtccagcagaagcgcagttgtcatcctggttc
caaggtccttgcctattggatgcaatagactctctccaacttcctcaaagagattactcg
aagccattcttattgccgatttgtgatgttgtaagggcacagtctcagggacaagtgtca
atatgcggtaagttggagaggggagctcttcaaactgggaataaggttttagttatgcca
tcgagagaaatggcaacagtgcgttctttggaatgtgattctcaggtttgtaacagtgca
aaagcaggagacagtgtcactatcaacctacaaggtattgatgcaaatcacgtgatggag
gggggtgtcttgtgccaccctgaatttcctgttccagttgcaaatcatttggaactgaag
gttctcatcctggacaattccattccaattttaattggctctcagttggaatttcttgta
caccatgctaaggaggctgcaagagttgtgaggattttgtcattgcttgatccaaagacc
ggaaaggagaccaagaaatcacctcgatgtcttctggcaaagcagaatgctatcattgag
gtcgttttgcaagggatggtttgcatcgacgagcattctaattgtaaagctctcggaagg
gtgtccctcaggtcatctggaagaaccgttgctcttggtctggtgactagaatgataggg
aagaaggaataa
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