Nicotiana sylvestris (wood tobacco): 104234988
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Entry
104234988 CDS
T05026
Name
(RefSeq) clathrin heavy chain 2
KO
K04646
clathrin heavy chain
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy04142
Lysosome
nsy04144
Endocytosis
nsy05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
104234988
04142 Lysosome
104234988
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
104234988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nsy04131
]
104234988
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nsy04147
]
104234988
Membrane trafficking [BR:
nsy04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
104234988
Exosome [BR:
nsy04147
]
Exosomal proteins
Proteins found in most exosomes
104234988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
IcmW
Totivirus_coat
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
104234988
NCBI-ProteinID:
XP_009786959
UniProt:
A0A1U7XJ43
LinkDB
All DBs
Position
3:complement(94615477..94627500)
Genome browser
AA seq
1705 aa
AA seq
DB search
MAAANAPITMKEALTLQSIGVNPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ
PLRRPITADSALMNPNSRILALKAQVPGTSQDHLQIFNIEAKQKMKSYQMPEQVVFWKWI
TTKMLGLVTQTSVYHWPIEGDSEPVKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLFSVDQQRSQALEAHAAAFATFRVPGNDRDSILISFATKSSNAGQVTS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASSIGGFYAINRRGQVLLATVNEATLVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERKEFDKILIYSKQVGYTPDYLFLLQTIMRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHGFLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKGGLYMRALQHYSELPDIKRVIVNTHAI
EPQALVEFFGTVSREWALECMKDLLVINIKGNLQIIVQVAKEYCEQLGVDACIKLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYNAEKTKNFLMEA
KLPDARPLINVCDRFGFVPNLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDGDLWEKVLNPENEFRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIRDINRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE
SFIRADDATHFLDVIHAVEDADVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLGDI
EEFILMPNVANLPNVGDKLFDEGLYEAAKIIFAFISNWAKLASTLVKLNQFQGAVDAARK
ANSAKTWKDVCFACVDAEEFRLAQICGLSIIVQVDDLEEVSEYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRHEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTVMNHSPDAWDHMQFKDIVVKVANVELYYKAVHFYLKEHPDLINDMLNVL
ALRVDHTRVVDIMRKAGHLRLVKPYMIAVQSNNVSAVNEALNEIYVEEEDYDRLRESTDL
HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
TGKVDELIKDKIEAQSEAKAKENEEKDVIKQQNMYAQLLPLALPAPPMPGMGGAGMGGGF
APPPPMGGMGMPPMPPFGMPPMGSY
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgctaacgctccgatcaccatgaaagaggccctcacgttgcaaagtataggg
gtgaacccgcagttcatcacgttcacgaatgttaccatggaatcggataagtatatatgc
gtaagagagacggcgcctcagaatagtgtggtgattattgatatgaacatgccaatgcaa
cctttgaggcgtccaattaccgccgattctgctcttatgaatcctaattctagaattttg
gctctaaaagctcaagtcccaggaactagtcaagatcacttgcagattttcaatattgag
gcaaagcagaaaatgaaatcatatcagatgcctgagcaggttgttttctggaagtggatt
actacgaagatgttaggtcttgttacacaaacatcagtctatcattggccaattgaaggg
gattctgagcctgtaaagatgtttgatagaacagccaatttagccaacaaccaaataatt
aactaccgatgtgatccttcagagaaatggttggttttgattggtatcgccccaggttca
ccagagaggccccaactggtcaaagggaacatgcaattattttcagtggatcagcaacga
agtcaagctctcgaggcacatgctgcagcatttgccacattcagggttcctggaaatgat
agggattctatactcatttcttttgccacaaaatcctcgaacgctggacaagtcacatca
aagttgcatgtcattgagcttggagcccagccagggaaaccatcttttacgaagaaacag
gcagatctattctttcctccagattttgctgatgatttcccagttgccatgcagatatct
cataaatacagtttaatttatgtcatcacaaagcttgggcttctctttgtctatgacctc
gaaacagctactgcagtgtacaggaataggatcagcccggatcctatttttctgacagca
gaagcttcatctattggtggtttctatgccatcaacagacgaggtcaagtgttgctcgcc
acagtaaatgaagcaactctagtaccttttgtcagtggtcaattgaataatctggagctt
gctgttaatcttgccaagagaggaaaccttcctggagctgagaatttggttgtccagcgg
tttcaagagttgtttgcccagacaaagtacaaagaagctgccgagcttgcagcggaatca
ccacaaggcatactccgtacacctgacactgttgccaaatttcagagtgttcctgttcaa
gcagggcaaacgcctccgctattgcagtactttgggacacttttaacaaaagggaagcta
aacgcttttgaatcattagaactgtcgcgtcttgttgtcaaccagaacaagaaaaacctg
ttggagaactggttggccgaggataagctggagtgtagtgaggaactcggggatcttgtg
aagactgttgataatgaccttgccctgaaaatatatatcaaagcaagagcgactccgaaa
gttgttgctgcttttgctgagcgcaaggaattcgacaaaattctgatatattccaagcag
gttggatatacacctgactacttgttccttcttcaaaccattatgcgatctgatccccag
ggagctgttaactttgcgctcatgatgtcccaaatggagggcggttgtcctgttgattac
aacactatcaccgatctatttcttcagaggaacatgatccgtgaggcaacagcattttta
ctggatgttctgaaacctaaccttccagagcatggctttctgcagactaaggtcttggaa
atcaaccttgtgactttcccgaatgttgctgatgctatattagcaaatgggatgttcagt
cattatgatcgacctcgtattgctcaactttgcgagaaaggtggtctttacatgcgggct
ctgcagcactattctgaactgcctgatatcaagcgtgttattgtgaatacacatgcaatt
gagcctcaggccttggttgagttctttgggactgtttcacgtgaatgggcactggaatgc
atgaaagacctccttgttatcaatatcaaagggaaccttcaaataattgttcaggttgca
aaagagtactgtgagcagttgggtgttgatgcttgcataaagctttttgagcaatttaaa
tcttatgaggggttatatttcttccttggatcatatttgagttccagtgaggatcctgat
atccactttaaatatattgaggcagctgccagaactggacaaatcaaggaggttgagcgt
gtcacaagagaatcaaacttctataacgcagaaaagacaaagaacttcttgatggaagcc
aaacttcctgatgctcggcctctgattaatgtttgtgaccgctttggttttgttcccaat
ctcacacactatctctataccaacaatatgctacggtatattgaaggttatgtccagaag
gtcaatccaggaaatgctcctttagttgtagggcagcttttagatgatgagtgtcctgag
gacttcattaagggattgatcctgtctgtgcgttctttgcttccagttgagcccttggtg
gaagaatgtgaaaagaggaatcgactccgcttgctgacacagttcttggagcatcttgta
agtgaaggaagtcaagatgtgcatgtacacaatgctctgggaaagattatcatcgatagc
aataacaacccagagcatttcctcacaaccaatccatactatgactcgcgcgttgtgggt
aaatattgtgagaagcgcgatcctaccctagctgttgttgcatataggagagggcaatgt
gatgatgaactcattaatgtgacaaacaagaactctttgttcaaacttcaggcgaggtat
gtggttgagaggatggatggtgatctttgggagaaagttcttaatcccgaaaatgagttt
agaaggcagcttattgatcaagttgtttccactgctctgcctgaaagcaagagccctgag
caagtttctgctgctgttaaagctttcatgactgctgatcttcctcatgaactgattgag
cttcttgaaaagattgtgctccagaactctgcattcagtgggaactttaatttgcagaat
ttgcttatcctgacagccatcaaagctgatccatccagagtaatggactatatcaatagg
cttgataattttgatggacctgcagtaggggaggttgctgtagaagcccaactttatgaa
gaagcttttgctatcttcaagaagttcaatctgaatgtccaggctgttaatgttctgctt
gacaacattcgtgatattaatcgggctgtggagtttgcattccgagttgaagaagatgct
gtttggagccaggtggctaaagctcaactgagagaaggattagtgagcgatgctattgag
tcatttattcgtgcagatgacgccacccactttttggatgtaattcatgctgtagaggat
gcagatgtttaccatgacttggttaagtatttgctgatggtaaggcagaagacaaaagag
cccaaagttgatagtgaactcatttatgcatatgctaaaattgatcgattgggtgatatt
gaagaatttattctcatgccaaatgttgctaatctaccgaatgttggtgataagctgttt
gatgaaggcttatatgaggctgcaaagatcattttcgctttcatttctaactgggccaag
ttggcgagcacgcttgtgaagttaaatcaatttcaaggtgctgtcgatgcagcacgcaag
gcaaatagtgctaagacatggaaagatgtctgctttgcttgtgttgatgctgaggagttc
cgtttggctcaaatttgtgggcttagcattatcgtgcaggtagatgacttggaggaagtt
agtgaatattaccaaaatagaggatgtttcaatgaattaatctctcttatggagagtggg
ctgggtttggagcgtgcacatatgggtatcttcacagaacttggtgttttgtatgccaga
taccgtcacgagaagctcatggaacacattaaattattctccaccagactcaacattccc
aagcttattcgtgcctgtgatgagcagcaacactggaaggaactcacatatttgtacatc
caatatgatgaatttgataatgctgccactactgtcatgaatcattctccagatgcctgg
gatcatatgcagttcaaagacattgttgtcaaagttgctaatgtggagctttattacaag
gccgttcacttctatttgaaagagcatccggatctcattaatgatatgctaaatgttctt
gcacttagagtggatcatacacgcgtagtggacataatgagaaaggctggtcaccttcgc
ctagtcaagccttacatgattgctgttcagagcaacaacgtttctgcagtgaatgaggcc
cttaacgaaatttatgttgaggaagaagactatgatagactacgtgaatcaactgatttg
catgataacttcgatcaaattggtcttgcacagaagatagagaaacatgagcttctcgag
atgcggcgtgttgctgcctatatctataagaaagctggtaggtggaagcaatccattgct
ctgtcaaagaaagataatctctacaaagatgccatggagacagcctcacaatctggagat
cgcgaacttgcagaggagttgcttgtttactttattgaacagggaaagaaagaatgcttc
gcatcatgcctgtttgtttgttatgatttgattcgcccagatgttgcccttgagcttgcc
tggatgaataatatgatcgactttgcattcccttacctgttacagtttatccgtgaatac
actggcaaggtcgatgagctaataaaagataagattgaggctcaaagtgaagcaaaagcc
aaagagaatgaagagaaggatgttattaagcagcagaatatgtatgcacagctactgcca
ttggctttacctgctccaccaatgccaggcatgggaggtgcaggcatgggaggtggtttt
gctcctcccccgcctatgggtggaatgggaatgcctcccatgcctccatttggcatgcca
cccatgggttcctactaa
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integrated database retrieval system
