Nicotiana sylvestris (wood tobacco): 104235340
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Entry
104235340 CDS
T05026
Name
(RefSeq) protein ALTERED SEED GERMINATION 2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nsy04121
]
104235340
Ubiquitin system [BR:
nsy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
104235340
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
WDR55
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_CAF1B_HIR1
Beta-prop_EML
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
ANAPC3
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
TPR_19
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
104235340
NCBI-ProteinID:
XP_070029684
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All DBs
Position
4:136234288..136248669
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AA seq
654 aa
AA seq
DB search
MESLCFHDGNITDLINKRSLHVRHDSGHGLQMHSSLLERMALERELEGHQGCVNAIAWNS
KGSLLISGSDDTRMNIWSYSSRKLLHSIETGHTANIFCTKFVPETSDELVVSGAGDAEVR
LFHLSHLKGRGAEDSGLTPSALFQCHTRRVKKIAVEVGNPHVVWSASEDGTVRQHDLREG
ASCPPAGSSRQECRNILLDLRCGAKKSLTDPPKQLFALKSCDISSTRPHLLLVGGSDAFA
RLYDRRMLPPLSSSQKKLPPPPCVSYFCPMHLSDRGRSSMHLTHVAFSPNGEEVLLSYSG
EHVYLMDVNPAHGGSMPYTSGDVTNLMNFAPLLNGIELQSSVSGIFVNGSSSKRIPVTKP
EKCKKLIQMAMKTLKEDSNFYYGIEACNEVLEGCRDDIGPFLTLECLCTRAAILLKRKWK
NDAHMAIRDCHRARKLNSSSFRPLLLIADALSQLGKHKEALEFAIGAQPLAPSDSEVSLK
VESIKDHIAAAEADKANKANGGESRSDPRAGRVLSLSDILYRSDANSDASQDGPRSERED
SDDDEELELAFETSISGDEGRDVDPDILHGSLNLRIHRRGDSTGETGRANGASGLPTSSQ
KEKAAYKPEAVIDMKQRYVGHCNVGTDIKQASFLGERGIFNFFNGFHADIHDYP
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaatcactctgtttccacgacggcaacatcactgacttgatcaacaaacgatccctc
cacgttcgccatgactccggtcatggattgcagatgcactcctctttgctggaaagaatg
gccttagaaagagaattggaggggcatcagggttgtgtgaatgcgatagcttggaactca
aaaggctcgcttttgatatctggatcagatgatacaagaatgaatatctggagttattca
agccgcaaacttttgcattccattgagaccggtcacactgccaacatattctgcacgaag
tttgttccagaaacttcagatgagctagtcgtttctggagcaggagatgctgaagttcgt
ctttttcatttgtctcatctaaagggaagaggtgctgaagacagtggtttgactccatcc
gctctatttcagtgtcataccaggagggttaaaaaaatagctgttgaagttgggaatcct
catgtggtatggagtgctagtgaagatgggactgtgaggcagcatgacttacgggagggt
gcgtcttgtcccccagctggttcttctcgtcaagaatgccgtaatatacttcttgacttg
cgctgtggagctaagaaatcattaactgatcctccgaaacagttgtttgctctgaagtcg
tgtgatattagctccacaaggcctcatttgctccttgttggtggaagtgatgcgtttgct
cggttgtatgatagaagaatgctgcctccattatcctcgagtcaaaaaaagctgccacct
ccaccttgtgtcagctacttctgcccaatgcatctttctgatcgtgggcgttccagcatg
catctgactcatgtcgcatttagtcccaacggagaggaggttttgcttagctacagtgga
gaacatgtatacttgatggatgtgaatcctgcacatggaggttctatgccgtatacttca
ggagatgtgacaaacctgatgaattttgctcccttgctcaatggaatcgaattgcaatca
tcagttagtggaatctttgtaaacggttcttcatcgaaaagaattccagttaccaagcca
gaaaaatgcaaaaaattgattcagatggcaatgaagactttgaaagaagattccaacttt
tattatgggatagaagcttgtaatgaagtcttggagggttgcagggatgacattggtccc
tttctaaccttagaatgtttatgcactcgtgcagcaatattgctcaagaggaagtggaaa
aatgatgcacatatggctataagagattgtcatagagctagaaagctcaattcatcttcc
tttaggcctcttcttttgatcgctgatgctctttcacagttgggtaaacataaagaagca
ttggagttcgctattggcgctcaacccttggctccatctgattctgaagtttccctaaag
gtggagagcataaaagatcatatcgctgcagctgaagcagacaaagcaaataaggcaaat
ggaggagaatctaggtcagatcctcgggcaggaagagtattatctctaagtgacatactt
tatcgttcagatgcgaacagtgatgcatcgcaagatggtcccaggtctgaaagagaggat
tctgatgatgacgaggagctagaattggcttttgaaacatcaatatctggtgatgaagga
cgggatgttgatcccgatatcctccatggaagtttgaacttaagaattcataggagaggt
gattccactggggagactggacgagcaaatggtgctagtggtttgccaacctctagtcaa
aaagagaaagcagcttacaagcctgaagcagtgatagatatgaagcaaagatatgttggt
cattgcaacgtaggcactgatataaaacaggccagctttcttggagaacgaggtatattc
aatttttttaatggtttccatgcagatattcatgattatccttaa
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