Nicotiana sylvestris (wood tobacco): 104235944
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Entry
104235944 CDS
T05026
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104235944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nsy04121
]
104235944
03036 Chromosome and associated proteins [BR:
nsy03036
]
104235944
Enzymes [BR:
nsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104235944
Ubiquitin system [BR:
nsy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104235944
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
104235944
Noncanonical PRC1 (PRC1.1)
104235944
Noncanonical PRC1 (PRC1.3/1.5)
104235944
Noncanonical PRC1 (PRC1.6)
104235944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-rbx1
DUF4695
zf-Nse
zf-UDP
RAWUL
zf-C3HC4_5
ZNF512_C2HC
zf-RING_11
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
104235944
NCBI-ProteinID:
XP_009788083
UniProt:
A0A1U7XB44
LinkDB
All DBs
Position
2:35337894..35347653
Genome browser
AA seq
450 aa
AA seq
DB search
MPAQKRSYDTPPTPPPLPDEKNDDSLQGNQNHDEEAYDSDDSDGTTCSSGGEKDEFITVR
LSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLR
DDPNYDALISLLYPDIDKYEEEELAFHEEEKARNKQIQASIAQTLRRQSEALGRKRTARA
TAAAFARRSQGRYRSLRGRRNFQGAEHQISDEEEDGNHDIGKDSSSADDRSIEVKPKRYK
KRGGRPSQASAASDENDAEINQESLGACSGLIRCSEILAWGKGGMRSNTRHGGLGGGTGK
FSRNSRVSKLIDRLSCSDENEGKLDVRLKLVPISEEDIPSLQRPYLCCRPTMEVKHLSQY
VAQQTSIEVGKIDIVLIKELNPSDNSSSSDIMAISTLVGDPCKIEIHTVNEHQTLGEIQE
MCGFSQRNLILAYGCKSKDRTDHDEGKVTV
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcaaaagcgttcgtacgacactcctcctactcctcctccgctaccggacgaa
aaaaacgatgattcgttacaaggtaatcaaaatcacgacgaagaagcctacgacagcgac
gattcggatggaactacttgttcgagcggcggcgagaaagatgaatttatcactgtgaga
ctttcagaaattcgcaaagaagtacagtgccctatatgtttaggcattattcgaaagacc
agaacagttatggaatgcttgcatcgcttttgtagagaatgcattgacaaatctatgcga
atggggaacaatgagtgtcctgcttgtcgtacccactgtgctagtcgccgttctctgaga
gatgatccaaactatgatgctctaatttcccttctatatccagatattgataaatatgaa
gaggaggaattggcttttcatgaagaggagaaagctcggaataagcagatacaagcttca
attgcacagacattacggcgacaatcagaagcactgggaaggaaacggactgctagagct
acagcagcagcttttgcgaggagatctcagggacgctatcgaagtttaaggggaagaaga
aattttcagggtgctgaacaccagatatctgatgaggaggaagatggtaatcatgatatt
ggcaaagattcttcctctgctgatgatcgctcgatagaagtcaaaccaaaacggtacaaa
aagaggggaggaaggccttcgcaggcttcagcagctagtgacgaaaatgatgcagaaata
aaccaagaatcacttggcgcatgtagtggacttattcgctgttcagagattcttgcctgg
ggaaaaggtggcatgcgaagtaacacgagacatgggggtcttgggggaggcactggcaaa
ttttccaggaatagccgagtctcaaagctaattgatcgtctttcttgttcagatgaaaat
gaagggaagttggatgtcagactgaagcttgttcccatatctgaagaggatataccaagt
ttgcaacgaccttacctttgctgccggcccactatggaagttaaacatttgagccaatat
gtagcacagcaaacgtccatagaagtcggcaaaatcgacatagtgctgataaaagagctt
aaccccagtgacaactcttcaagttctgatatcatggctatttccacactcgttggagat
ccttgtaagattgaaatccatacggtaaacgagcatcagacattaggggaaatccaagag
atgtgtggttttagccagcgtaatctgatcttagcatacggatgcaagtcaaaggatagg
acagaccatgatgaagggaaggtgaccgtttaa
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