Nicotiana sylvestris (wood tobacco): 104236072
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Entry
104236072 CDS
T05026
Name
(RefSeq) uncharacterized protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104236072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104236072
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104236072
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104236072
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104236072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
PWI_ABCF3
Motif
Other DBs
NCBI-GeneID:
104236072
NCBI-ProteinID:
XP_009788229
UniProt:
A0A1U7XMQ3
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All DBs
Position
1:complement(147523011..147529548)
Genome browser
AA seq
690 aa
AA seq
DB search
MFPGQNPRPQRPSQFHTNGIAPSAPLQIMGNPGSFMQNPMQLQPQMAIPNINSNTQFSPQ
QLFAFQMNQMNNVNSQQPKGQVLAQNVVNPPQFLNQNVAMQNLNQLLQLQMAMQMPGFAQ
LVPGNVPLYPNQVSQGIGLQNPNFAMNGHLGLMTASGTVQQSMNGNLSKQMANATRQLQG
QSPLMNSFGTVQQPQTQNFSVPASANLQVSQGMRPQSSNFVMNAHMGPVNANGVVQQSKN
GFPKQMSNVTQQLQGQLPLMNPFGFVQQPQAQNFNTPASANTQVCQGMGPQISNFAMNAQ
LGLLNGNGAVQQSMNGLFEQMPNATQQLLGQLPPINPFGFVQQPQTQNFNAPASANTQAN
PEGVGGLNKSIGNQQNSYNSNFSRNQKHGAKSMKSQFGKGKFSPHSKSLEKGHHRKGEKK
SFLANSVKPEMEKKRSLLVTYSAQEIRRWREERRKNYPSKSNLEKKPTEKRAETDDSSSA
AKLRRQQLKEILAKQAELGCEVAEIPSSYLSDSEKQGDGREQKRPLSRKERFQKKFNKRE
RFNRNDRFSKKRRFGNSDSSITRDQNASTAGQVTETAREPTLLQKLLSSDIRRDKRHLLQ
VFRFMTMNSFFKDWPEKPLRFPQVILKETGQEIEAAEEIYDAIDATVEKSANDSDNDEEN
NIPEFAEAVSELQENSSNSESVKLEGQITN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctggtcaaaatccaaggcctcagcgcccttctcagttccataccaatggaatt
gcaccttcagctcccctgcagattatgggtaacccaggaagctttatgcaaaaccctatg
caacttcagcctcagatggcaattccaaacatcaactcaaatacccaattttcccctcag
cagcttttcgcgttccaaatgaaccagatgaataatgttaactctcaacaaccaaaaggt
caagtcttggcccaaaatgttgttaacccacctcaattcttgaaccagaatgttgcaatg
caaaatttgaaccagcttctccaattacaaatggctatgcaaatgccaggttttgctcag
cttgttcctgggaatgttccgttgtatccaaatcaggtgtctcagggtattggacttcaa
aatcctaactttgctatgaatgggcatttgggtcttatgactgccagtggaactgtccag
cagtccatgaatggaaatttgtctaagcaaatggctaatgcgactcggcaattgcaaggg
cagtcgccactgatgaactcttttggcactgttcagcagccacaaactcagaacttcagt
gttcctgcttctgctaatttgcaggtttctcagggtatgaggcctcaaagttccaacttt
gttatgaatgcgcatatgggtcctgtgaatgccaatggagttgtccagcagtctaagaat
ggttttcctaagcaaatgtctaacgtgactcagcaattgcaaggccaattgcctctgatg
aatccttttggctttgttcagcagccacaagctcagaacttcaatactcctgcttctgct
aatacacaggtgtgtcagggtatggggcctcaaatttccaactttgctatgaatgcacaa
ttgggtcttttaaatggcaatggagctgtccagcagtctatgaatgggttgtttgagcag
atgcctaatgcaactcagcaattgctaggccagttgcctccgataaatccttttggcttt
gttcagcagccacaaactcagaacttcaatgctcctgcttctgctaatacacaggcaaac
cctgaaggtgttggtgggcttaacaaatcaataggcaaccagcaaaattcttacaatagt
aacttctcaaggaatcaaaaacatggcgctaaatctatgaagtcccagtttggcaaaggg
aagttctcacctcatagtaaaagcctagaaaaaggccatcacagaaaaggggagaaaaaa
agttttcttgctaattcagtgaaacccgagatggagaaaaagaggtctctcttggtgact
tattcggcccaagaaatccgacggtggcgggaagaacgccgtaagaattacccctcaaaa
tcaaaccttgagaagaagccgacagagaaaagggcagagactgatgatagttcaagtgct
gccaagttgcgccgtcagcaacttaaggaaattctggccaagcaggctgagttaggctgt
gaagttgcagaaataccatcatcctatctatcggattctgagaaacaaggggatggaagg
gagcaaaaaaggccattgagtagaaaagagaggttccaaaaaaagttcaataaaagagaa
agattcaatcgaaatgaccgcttctccaagaaacgaagatttggaaactctgactcatca
attactcgtgatcaaaacgcttctactgcaggtcaggttacagaaaccgcaagagaacca
acactactacagaaactattgagttcagatattcggagagataaacgccatctattgcag
gtctttaggttcatgaccatgaattctttctttaaagattggcctgagaaacccctgaga
tttccccaagtgatacttaaggaaacaggacaagaaattgaagctgctgaagaaatatat
gatgctatcgatgcaaccgtcgaaaaatcagcaaatgacagtgacaatgatgaggaaaat
aatattcctgaatttgctgaagcagttagtgagttacaagaaaatagtagtaactctgaa
agtgtcaagctggagggacaaatcactaattag
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