Nicotiana sylvestris (wood tobacco): 104236172
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Entry
104236172 CDS
T05026
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03440
Homologous recombination
nsy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104236172
03460 Fanconi anemia pathway
104236172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsy03032
]
104236172
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104236172
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
104236172
DNA replication proteins [BR:
nsy03032
]
Eukaryotic type
DNA Topoisomerases
104236172
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
104236172
FA (Fanconi anemia) pathway
104236172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
zf-CCHC
zf-CCHC_2
Zn_ribbon_GRF_2
Toprim_4
Motif
Other DBs
NCBI-GeneID:
104236172
NCBI-ProteinID:
XP_070030593
LinkDB
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Position
5:80205346..80268929
Genome browser
AA seq
915 aa
AA seq
DB search
MASGGNGGGGRVIRVLNVAEKPSVAKAVSGILSRNQGGGMRVRDGRSRYNKIFEFNYTIR
NQPCQMLFTSVTGHLMELEFDDRFRKWHSCDPLHLYDAPVRKYVPQDKLDIKRTLEEEAR
GCQWIILWLDCDREGENIAFEVLEVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQ
LFSDAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDFATDDRNLVLSYGPCQFPTLGFVVE
RYWEIQAHEPEEFWTINCTHNFDEGSATFNWMRGHLFDYTCAVTIYEMCIQEPTATVSKV
KQQEKLKYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDCFSEKT
DLRTMVQEQGGHPVWGSYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGESRWSQ
DHHRVYELVVRHFLACVSKPAVGAETTVEIDIAGESFFACGRVILAKNYLDVYRFESWGG
SVIPTYTFGQQFIPRSLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDR
FYAIKDSSTRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSMGTKRKTEVLET
CLQQMKACFLDARANKGKLFEAMAIFFERSNRSSGGEQQVVGDVVRRCGLCLESDMVLRQ
KPDGNFMVGCLGYPQCRNVVWLPGSLSEASVTENTCTSCGPGLVYKIQFRFRRLEIPPNY
SAQHIGCIGGCDDILRQLVGICGTGSRSSSNTFGRGRGNPTASSSAQRGNSRAQGSCAYC
RQTGHLSNDCPSQASRSCTARSQEVDLQNGESSIPCNSCGAPCNLRTANTASNRGRKFFS
CQSRECNFFVWEDTLSGGERTNTSASTSSRRGGRGQGAPNTSGVSFVSATGEPITGRCFI
CGDPGHFANVCPRRG
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggtggaaacggaggcggagggcgggtgataagggtgctgaacgtggcagaa
aagccatcggtggcgaaggcagtgtcggggatactatcgaggaatcaaggaggtgggatg
agagtgagagacggacgttccaggtacaacaaaatcttcgagttcaactacaccattcgg
aaccagccttgccagatgctctttacctctgtcaccggccacctcatggagcttgagttt
gacgatcgtttccgcaaatggcactcctgtgaccccctccacctctacgatgcccctgtt
cgcaagtatgtacctcaggataaattggatatcaaaaggacactggaggaagaagccaga
ggatgtcagtggattatattgtggcttgattgtgatagagaaggagaaaatattgcattt
gaagtgttggaagtatgtagacaagcgaatcataaccttaatgtgtggagagctcgtttc
tctgccttaattgacagggaaattcaccaatcagtgcagacccttgttcagccaaatcag
ttattttctgacgctgtagatgttcggcaagagatagatcttcgtattggagcttctttt
acaagatttcagacaatgcttctgagagatgcatttgtccttgattttgcaactgatgat
agaaatcttgtcttaagctatggtccctgccagttccctacacttggctttgttgtggag
cgttattgggaaatacaagcacatgagcctgaagagttttggacaatcaattgtactcac
aatttcgatgaaggcagtgctacgtttaactggatgcgtggtcatctgtttgattacaca
tgtgcagtaacaatttatgagatgtgcatccaggaacccactgcaacagtttccaaagtt
aaacagcaggagaaactcaaatacccccctcatccattaagtacaattgagcttgaaaag
cgtgcatccagatacttccgtatgagttccgagcagacaatgaaggtggcagaagatcta
tatcaaaatggttttatcagttatcctcgcacagaaactgattgcttctcggagaagact
gacttgcgtacaatggtgcaagaacaaggtggtcatcctgtatggggttcatatgcgcag
cgcctactagaccctcaatcaggactatggagaaaccctagtggaggtgggcatgatgac
aaagcccatccacccattcatccaactaaattttctgctggagaatctaggtggagccag
gaccaccatagagtgtatgagttggttgttcgccatttcttggcctgtgtttctaaacct
gctgttggggctgaaactacagttgagattgatattgctggtgaatccttttttgcatgt
gggagagtgatacttgcaaaaaactaccttgacgtgtaccgatttgaatcatggggaggt
tcagtgatccccacgtacacttttggtcaacagtttataccaagaagtttgacccttgat
tcaggagttactagacctcctccccttttaagtgaggctgatctattgggttgtatggac
aaggctggcattggaactgatgcaacaatgcatgaccatataaagaaactacttgatcga
ttttatgcaattaaagactcgagcactcggttctcgccaactaaactaggggaggcgcta
gttatgggatatgatgatatgggttatgaactatggaaaccatatctccgtgctatgatg
gaatgtgatatgaaagctgttagcatgggaaccaagagaaagacagaggttctagaaact
tgcttgcagcagatgaaagcttgttttttagatgccagggcaaacaaaggaaaactcttt
gaagccatggctatcttctttgaaagatcaaatagatccagcggtggcgagcaacaagta
gttggagatgtcgtgcggagatgtggactttgtctagagtcagatatggtactcagacaa
aaaccggatggtaattttatggttggttgcttgggttacccacaatgcagaaatgttgtc
tggctacctggatctctatcagaagcttctgttacggagaatacgtgcaccagctgcggt
ccaggactagtatacaagattcagtttagatttcgccggctggaaataccgccaaattat
agtgctcaacatataggttgcattggtggctgtgatgatattctaaggcagctggtggga
atttgcggaactggttctcgcagtagttcaaacactttcggcagaggacgaggaaaccct
acagcatccagcagtgcacagagaggcaattccagagcacaaggttcttgtgcatactgc
aggcaaacagggcatttgtcaaatgattgtccttcacaggcttctcgtagttgcactgct
cggtctcaggaagttgacttgcaaaatggagaatcttcaatcccttgtaattcatgtgga
gcgccttgcaatttgcgcactgccaatactgccagcaacaggggaagaaagttcttttca
tgtcaatcacgggagtgcaattttttcgtttgggaagataccctcagtggaggtgagcgc
acaaatacttctgcgtccactagcagcagaagaggtggtcgtggccaaggtgctccaaat
accagtggtgtgtcatttgtgtcagcaacaggtgaaccaataactggcagatgtttcatc
tgcggtgatccaggtcactttgctaatgtctgtccacgtcgtggatga
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