Nicotiana sylvestris (wood tobacco): 104236733
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Entry
104236733 CDS
T05026
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104236733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104236733
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104236733
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104236733
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104236733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
104236733
NCBI-ProteinID:
XP_009789025
UniProt:
A0A1U7XQ11
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All DBs
Position
2:complement(177679890..177691422)
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AA seq
690 aa
AA seq
DB search
MDEGEGGLSFDFEGGLDTGPTHPTASVPVMTQSSDHNIAAAAAPNANINQPPTVSAHVGG
DVGFVGNRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVY
KHTIEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLASNNYGYSNRFY
QNRNANYSTQADKPQASQGQNGMGAVKSTATETPIIQQIQPHQQQALQTQQQGGTTQTQI
HPNGQQNQADRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSV
ENVILIFSVNRTRHFQGCAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQ
KTHHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKRQEEKA
KGVNPDNGNDNPDIVPFEDNEEEEDEESEDEDESFDQGFGPAALGRGRGRGIVWPPIMPL
GHGPRPLPGMRGFPPGMMGDGFSYGAMTPDGFPMPDHFGMGPRPFGPYGPRFSNDMMFHG
RPPAGGFGMMMGPGRPPFMGGMGPGATGPPRAGRAVGMHPSFVPPSSQPSQNPYRPKREQ
RAPVHDRNDRFSSGSDQGKGQEMAGSVGGPDGVNYPQRGKTEQDAQFGAGNGFKNDESES
EDEAPRRSRHGDGKKKRRDTDDDAATASEK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggtttaagctttgatttcgagggcggcttagacactgggccg
acacacccaactgcttccgtaccagtaatgacacaatcttccgatcacaacattgccgcc
gccgccgccccaaatgctaacattaaccagccgcctactgtctcagcccatgtaggcggg
gatgtagggtttgttggcaatcgtcggagtttcaggcagactgtttgccgccactggcta
cggtcactgtgtatgaagggtgaagcctgtggctttcttcatcagtatgataaatctcga
atgccaatctgtcggttttttagactgtatggggagtgccgtgaacaggactgtgtttat
aagcacaccattgaggatatcaaggaatgcaacatgtacaaattggggttttgtccaaat
ggtcctgattgtcgatatagacatgcaaagttgcccggacctccaccaccagtggaagaa
gttcttcagaaaattcagcatctggcgtccaacaactatggttactcaaacaggttttac
caaaaccggaatgctaattattcaacacaggctgacaaacctcaagcttcacaaggacag
aatggaatgggtgctgtgaaatctacagcaactgagacacccattatacaacagatccag
cctcatcaacaacaagctttacagactcaacaacagggtggcacaactcaaacacaaatt
catcccaatggccagcaaaatcaagcagataggactgcagtagttctgcctcaaggaacc
tctaggtactttatagttaaaagctgcaaccgtgagaatcttgaattgtcggtacaacaa
ggagtttgggcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactccgtg
gaaaatgttattctgatattttcagttaatcggactagacattttcagggttgtgcaaag
atgacatctagaattggtggcgctgctaaaggaggaaattggaagcatgaacatggaact
gcccattatggacgtaatttttcagtaaaatggttaaagctgtgtgaactgtccttccag
aaaactcaccacttgaggaatccatacaatgagaacttaccagtgaagataagcagagat
tgtcaagaattagaaccctctgttggtgagcagttggcttctttgctttatcttgaacca
gatagcgaacttatggcaatctcacttgcagcagaatccaagagacaggaagaaaaggcg
aagggagtgaaccctgacaatgggaatgataatccagatattgtaccatttgaagacaat
gaagaagaggaagatgaagaaagtgaggacgaggatgaaagctttgatcaaggtttcgga
ccagctgctcttggcagaggaagggggaggggaattgtgtggcctccaataatgccttta
ggacatgggcccaggcctcttcctgggatgcggggcttccctccgggcatgatgggtgat
ggattttcttatggagctatgacacctgatggttttccaatgcctgatcattttggaatg
ggtcccagaccttttggtccatatggcccacgattttcaaatgatatgatgtttcatggc
cgccctccagctggtggatttgggatgatgatgggtcccggaaggccccctttcatgggc
gggatgggtcccggagcgacaggcccacccagagctggtcgagcagttggtatgcatcca
tcatttgttccaccctcatctcagccttctcaaaatccttataggcctaaaagagaacag
agagctccagttcatgacaggaatgatagattcagctccggttcagatcaaggtaagggt
caggagatggcgggctcagttggtggaccagatggagtaaattatccccaaagagggaaa
accgaacaagatgcccagtttggtgctggaaacggcttcaaaaatgatgaaagcgaaagt
gaggatgaagcaccaagaagatcaagacatggggatggaaagaagaagaggcgggatact
gatgatgatgctgcaactgcttcagaaaaatag
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