Nicotiana sylvestris (wood tobacco): 104236937
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Entry
104236937 CDS
T05026
Name
(RefSeq) phytochrome B isoform X1
KO
K12121
phytochrome B
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
104236937
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
HATPase_c
GAF
HisKA
PAS_9
PAS_4
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
104236937
NCBI-ProteinID:
XP_009789287
UniProt:
A0A1U7XEJ3
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Position
9:125329872..125338674
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AA seq
1133 aa
AA seq
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MASGSRTKHSHQSGQGQVQAQSSGTSNVNYKDSISKAIAQYTADARLHAVFEQSGESGKS
FDYSQSIKTTTQSVVPEQQITAYLTKIQRGGHIQPFGCMIAVDEASFRVIAYSENACEML
SLTPQSVPSLERPEILTVGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPF
YAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDVKLLCDTVV
ESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRV
RMIVDCHATPVRVVQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGND
EEAVGGRSSMRLWGLVVGHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHV
LRTQTLLCDMLLRDSPTGIVIQSPSIMDLVKCDGAALYCQGKYYPLGVTPTEAQIKDIVE
WLLTYHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWG
GAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEAS
NSKAVVHAQLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTD
LSVEEAMGKSLVHDLVHKESQETAEKLLFNALRGEEDKNVEIKLRTFGSEQLKKAVFVVV
NACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPSPLIPPIFASDENT
CCSEWNTAMEKLTGWSRGEIIGKMLVGETFGSCCRLKGPDAMTKFMIVLHNAIGGQETDK
FPFSFFDRNGKYVQALLTANKRVNMEGQIIGAFCFIQIASPELQQALRVQRQQDKKCYSQ
MKELAYLCQEIKSPLNGIRFTNSLLEATDLTENQKQYLETSTACERQMSKIIRDVDLENI
EDGSLTLEKEEFFLGSVIDAVVSQVMLLLRERSVQLIRDIPEEIKTLTVHGDQVRIQQVL
ADFLLNMVRYAPSPDGWVEIQLQPNMKQISDEVTVVHIEFRIVCPGEGLPPELVQDMFHS
SRWVTKEGLGLSMCRKILKLMNGEIQYIRESERCYFLIILDLPMTGRGSKSVG
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggcttctggaagtagaacaaagcattctcatcagtcaggtcaaggtcaagttcaagct
caatcttcaggcacaagtaatgttaattacaaagattcaataagcaaagccatagcacag
tacacggctgatgctaggcttcatgctgtgtttgaacaatctggtgagtctggcaagtct
tttgattattcacagtctattaaaactactacacaatctgttgttcctgaacagcaaatt
actgcttatttgactaaaatccaaagagggggtcatattcagccttttggttgtatgata
gctgtagatgaggctagttttcgtgttattgcttacagcgaaaatgcgtgcgaaatgctt
agtctaactccacaatcagttccaagccttgagcggcctgagatcctcactgttggaact
gatgttaggaccctttttactccttctagctctgttttgctagaaagagcatttggggcg
cgcgagatcactttgctgaatcctatttggattcattccaagaattctggcaagccattt
tacgcaattttgcatagggttgatgtcgggattgtaattgatttggagcctgctagaaca
gaggaccctgctttatccattgctggcgcagtgcagtcacaaaaacttgctgtgagggct
atttctcatttgcaatcacttcctggtggggatgttaagcttttgtgtgatactgtggtt
gagagtgtgagggagttaactgggtatgatcgggttatggtatataaatttcatgaggat
gagcacggggaggtagtggctgagagcaaaagaccagatttagagccctatattggtttg
cattatcctgctaccgacattcctcaagcttcgcggtttttgtttaagcagaacagggta
agaatgattgtggactgccatgccacccctgtgcgggttgttcaggatgaatcactgatg
cagcctttatgtttagttggttccacacttagagcccctcatggttgccacgcgcagtac
atggcaaatatggggtctattgcgtcattaacactagcagttattatcaatggaaacgat
gaggaagctgttgggggccgaagttcaatgaggctgtggggcttggttgttggacaccat
acttctgctaggtgcattccattccctcttcggtatgcctgtgaattccttatgcaggcc
tttggactccaattgaacatggagttgcaactggcatcacagttgtctgagaaacatgtt
ttgaggacacaaacactgttatgtgacatgctccttcgagactcacctacggggattgtt
atccagagccccagtattatggaccttgtgaagtgcgatggcgctgctctgtactgccag
gggaagtactatccattaggcgttacaccaactgaagctcagataaaggacattgtggag
tggttattgacttaccatggggactcaacaggtttaagtactgacagtttggctgatgca
ggatatcctggggcagctttgcttggtgatgcagtttgtggtatggctgttgcttatata
acttctaaagatttcttattttggtttcgctcccatacagcgaaagagataaagtggggt
ggtgcaaagcatcatcctgaagacaaggatgacgggcagagaatgcatccacgttcttcc
ttcaaggcatttctggaagttgttaaaagccggagcttaccatgggaaaatgcagaaatg
gatgcaattcactctctgcagcttattctgcgagattcatttaaggatgccgaggcaagt
aattctaaggctgttgtgcatgctcagcttggggaaatggagttgcaagggatagatgaa
ctgagttctgttgccagagaaatggttagattgatagagactgcaactgctcccatattt
gctgttgatgtcgatggttgcataaatgggtggaatgcaaaggtcgctgaattgacagat
ttatctgttgaagaagcaatggggaagtccttggttcatgatcttgtgcataaagagtca
caggagactgctgaaaagcttctcttcaatgctctgagaggcgaagaagataaaaatgta
gaaataaagttaaggacatttggatctgagcaactgaagaaggctgtttttgtggtggtt
aatgcttgctctagcaaagattacacaaacaacattgttggtgtttgttttgttggccag
gatgttactgggcaaaaagttgtaatggacaagtttattcacatccaaggtgattacaag
gccattgtgcacagtcccagtcctctgatcccacccatatttgcgtcagatgagaacact
tgttgctctgagtggaacactgccatggaaaagctcactggttggtctagaggggagatc
attggaaaaatgttagttggtgagacttttggaagttgttgccgtctcaagggtccagat
gccatgacaaagttcatgatcgtgttgcataatgcaattggaggccaggaaacggacaag
tttccattttccttttttgaccgtaatgggaaatatgtgcaagctcttttgactgcgaac
aagagagtcaatatggagggccagattatcggggctttctgtttcatacagatagccagt
cctgaattgcagcaagctctaagagttcaaaggcaacaggacaagaagtgttattctcag
atgaaagagttggcatacctttgtcaggaaataaagagtcctttgaatggtatacgcttt
acaaattcattgttggaggcgacagatttgacagaaaaccagaagcagtatctggagaca
agtactgcttgtgagaggcagatgtctaagatcataagggatgttgacctggaaaacatt
gaggatggttctctgacccttgagaaagaagaattttttcttgggagtgtaatagatgct
gttgttagccaagtgatgttattgctgagggaaagaagtgtgcaattaatcagggatatt
ccagaggaaattaagacattaacagtacatggtgatcaagtgagaattcaacaggtcttg
gcagatttcttgcttaacatggtacggtatgcaccatcacctgatgggtgggtagagatc
caacttcagccaaatatgaagcaaatatctgatgaagtaactgttgtgcatattgaattc
aggattgtatgccctggtgaagggcttcctcctgaattggttcaagacatgttccacagc
agtcggtgggtaaccaaggaaggcctagggctgagcatgtgcagaaaaatcttaaagctt
atgaatggagaaatccagtatatcagagaatcagaaagatgttatttcctgatcatcctt
gacctaccaatgaccggcagaggttcaaagagtgttggctag
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