Nicotiana sylvestris (wood tobacco): 104237260
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Entry
104237260 CDS
T05026
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03030
DNA replication
nsy03420
Nucleotide excision repair
nsy03430
Mismatch repair
nsy03440
Homologous recombination
nsy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104237260
03420 Nucleotide excision repair
104237260
03430 Mismatch repair
104237260
03440 Homologous recombination
104237260
03460 Fanconi anemia pathway
104237260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nsy03000
]
104237260
03032 DNA replication proteins [BR:
nsy03032
]
104237260
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104237260
Transcription factors [BR:
nsy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104237260
DNA replication proteins [BR:
nsy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104237260
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104237260
MMR (mismatch excision repair)
104237260
DSBR (double strand breaks repair)
HR (homologous recombination)
104237260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_3
DUF223
DUF936
Motif
Other DBs
NCBI-GeneID:
104237260
NCBI-ProteinID:
XP_009789663
UniProt:
A0A1U7XFL7
LinkDB
All DBs
Position
8:complement(108475493..108479644)
Genome browser
AA seq
908 aa
AA seq
DB search
MPPINLTEGAIAILTNREAHAEDFKPVLQITDIRLVNTQNQNNNNERYRILLSDGEFLQQ
GMLATQKNDLIRSQQIQKGSIIQMNQFVCNNIQNRMIIIVIELDILLETCDTIGEPKHYL
PNGISPSVPGPAAPLQPSTNQSGGLSGSPQSFTAVSATSSSAPRSNMPGGMRSPESTRSI
GYNTSSAGNIDSERYSSTSAPLYPKAESGPAISRAPMNNYVRPPQPSYQQHPQSSYQQPP
PLYSNRGPIAKNEAPPRIVPIAALNPYQGRWTIKARVTAKAELRHYNNQRGDGKVFSFDL
LDSDGGEIRVTCFNSVADQFYHQIEPGRVYLISKGSLRPAQKSYNHLPNDHEIMLESTSV
VQPCFEDDRTIPQQQFHFRPISDIEALENNSVVDVIGVVSSISPSSSIMRKNGTETQKRV
LQLKDMSGKSVELTLWGNFCNAEGQTLQSMCDSGASPVLAVKAGRVNDFNGKSVGTISTS
KLFTEPDFPEALKLKAWFEREGKNMPSVSLSREVSSIGRTDVRKTISQIKDERLGTSEKP
DWITISATVTFIKGENFCYPACPLMIGDRQCNKKVTNNGDGKWRCDRCDQTVDECEYRYI
LQFQIQDHTGLTWVTAFQECGDQIMGVSAKELYFLKYEGQDDDRFTDIMRNVLFNKFIFK
LKVKEEMFSDEQRVKSTVVKAEKLNFQSEIRFLLDLIDKNNGQESSTLPPKTDNATPTSG
YNNAGFGSRTIEPMNPVANYGGSNSSISRESGLQGNQQGQYGNQFTGSQFAPPGSTGMYM
SCNSCGGTGHSASNCPSIMSGQGQAYGGGFGNRVTSGMSSDGASGECYKCHQFGHWARDC
PGVSNAPPATNMTPASGMSSGGASVECYKCHQLGHWARDCPGVSSAPAANNMTPGRYGNP
PRQRVGGF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgataaacttgacggaaggcgcgatagcgattctaacgaaccgcgaagcacat
gcggaggattttaaaccggtgttacaaatcacagatattcggttagtgaacactcagaat
cagaataacaataacgaacggtaccggatccttttatcggacggggagtttcttcagcaa
gggatgttagctacgcaaaaaaacgatcttattcggtctcaacagattcaaaaaggatct
attattcagatgaatcagttcgtttgtaataacatccaaaatcgaatgatcatcattgtc
attgaattagatattttactggagacatgtgataccattggagaaccaaagcattatctc
ccaaatggtattagtccttcagtgccagggccagctgccccacttcagccttccaccaat
caatcaggtggtttaagtggcagccctcaatcctttactgctgtttcagctacttcaagc
tcagctccaagatcaaatatgcctggtgggatgcgatctcccgagtcaacccgtagcatt
ggttataatacttcctctgctggtaatattgactctgaaagatatagttcaacaagtgca
cccctttaccccaaagcagaatctggtccagcgatttcacgggctccgatgaataattat
gtgcggccacctcagccttcttatcagcagcatcctcagtcttcttatcagcagccacca
ccgttgtactcaaacagaggacctatagccaagaacgaagcaccgccgaggattgttcca
attgctgctctcaatccatatcagggtcgatggactatcaaggccagggttactgctaag
gcagaactcagacactacaacaatcaaaggggtgatggaaaagtattctcttttgatctt
cttgattctgatggaggagaaataagagtaacatgctttaactctgtagctgaccaattt
taccaccagattgagccaggtagagtgtatttgatttccaagggtagcttgagaccagct
cagaaatcttacaatcaccttccaaatgaccatgaaattatgctcgagagcacatcagtg
gttcaaccttgttttgaggatgacaggactattcctcaacaacaatttcattttcggcca
atcagtgatattgaggccttggagaacaatagtgtggtagatgtgattggtgtggtgtct
tcaataagtccatctagctcaataatgaggaaaaatggtacagaaactcagaaaagagtt
ctccagctgaaggacatgtctggcaaaagtgttgaattaactttgtggggaaatttctgc
aatgcagaaggtcaaacacttcaaagtatgtgtgattctggagcttcccctgttttggca
gtcaaagctggtagagtaaatgattttaatggaaaatctgtaggtactatatctacaagc
aagttgtttacagaaccggattttcctgaagctctaaaactgaaggcatggttcgagagg
gagggaaagaacatgccatcagtatctctttcccgagaagtgagcagcattggtcggaca
gatgtgcgaaaaactatatctcaaatcaaagatgaacgattgggcacttccgagaagcca
gattggatcacaataagtgccactgttacatttataaagggtgagaacttttgctatcct
gcttgtcccctcatgataggagatcgacagtgcaacaaaaaagtgacaaataatggggat
gggaaatggcggtgtgacaggtgtgatcagactgttgatgaatgcgaatataggtacatt
cttcagttccagattcaggaccatactggcttaacctgggttactgcatttcaggaatgt
ggtgaccagatcatgggtgtctctgcaaaagaactgtatttcctaaaatatgaggggcag
gatgatgatagatttacagatatcatgcgtaatgtcttatttaacaaatttatcttcaaa
ttgaaagtgaaagaagagatgtttagcgatgaacagcgcgttaagtcaacagtggtcaaa
gcagagaagctgaacttccaatcagagatccggtttctgttggatttgatagacaagaac
aatgggcaggaatccagtactctgcctcctaagacagataatgcaactccaacttcaggg
tataataatgctggatttgggagtagaaccatagaaccgatgaatcctgttgcaaattat
ggtggcagcaatagcagtatcagcagagaaagtggactgcagggaaatcagcaaggtcaa
tacggaaatcagtttactggctcgcagtttgctccacctggttctacaggcatgtatatg
agctgtaatagttgtggtggaacaggccatagtgcttcaaactgtccaagcatcatgagt
ggtcagggccaggcatatggaggtggctttggcaatagggtaacttcaggaatgagcagt
gatggtgcttccggtgagtgctataaatgccatcagtttggacattgggcaagagattgc
ccaggtgtaagcaatgcaccccctgccactaacatgactcctgcttcaggaatgagcagt
ggtggtgcttccgttgagtgttataaatgccatcagcttggacattgggcaagagattgc
ccaggtgtaagcagtgcacccgctgccaataacatgactcctggaagatatgggaatcct
ccaaggcaacgtgttggtggattttga
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integrated database retrieval system
