Nicotiana sylvestris (wood tobacco): 104238274
Help
Entry
104238274 CDS
T05026
Name
(RefSeq) uncharacterized protein LOC104238274 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104238274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nsy03000
]
104238274
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104238274
04121 Ubiquitin system [BR:
nsy04121
]
104238274
Enzymes [BR:
nsy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104238274
Transcription factors [BR:
nsy03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104238274
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104238274
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104238274
Ubiquitin system [BR:
nsy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104238274
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
zf-TFIIIC
Nup35_RRM_2
Rtf2
Motif
Other DBs
NCBI-GeneID:
104238274
NCBI-ProteinID:
XP_009790895
UniProt:
A0A1U7XWM5
LinkDB
All DBs
Position
Unknown
AA seq
865 aa
AA seq
DB search
MTMMSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCVWCWHHIMDIAEKEASEGRCPACR
TKYEKDKVVAMQANFERAENNNSNRKSKPPKAKPKANEVRKDLTNVRVIQRKMAYVTGLP
LSLADEDLLQRKEYFGQYGKISKISLSRTAGGSIQLLTNDTCSVYITYSKEEDAIQCIQF
VHGFVLEGRYLRASFGTAKYCHAWLRNMPCSNPSCLYLHSLGADEDSFGKDEVAAIHTRS
RVQQIVGATSSAMKRSGNVLPPPIDELSNTSFTSTENSTIRSAGVTNDTVDHRSYMARVV
PSSDKDGGAGEPNGMTSFVDVGLSNSSRAEKDGNSSEDSRILDLCSNLSSIPINKDNHAQ
ETYSDRVLFEVPSPNQPVNHLRDQNTTEISDEPFREDSTSFDGQRSKDLNSICQEPFLMS
SRSAKCTEDYGGNSLLHRACSSSINGMEHRSLHNQAEETLPPLSCVNSTLNDGLHDLKFQ
SSVKSDTIYRGSNSFSNEEIVEHLRRTENGSLNNFDESSAFNPVKNSIISNILAMDFGSC
ENSLTSRHSLTGLCNEPNGQRGSWNSLHSGQGFSFMKQDGFSSQRADLDSSSNISLMSNQ
SSILHDFRERKEQHMHESQYQTVSRPKGLAPPGFSIPSRDLPPGFPLSDEIGGFPHTLSV
TSIYAGSQLVNSSSNLIHPPSTRSTRTAGEADFVDPAILSCGKGKPTNGLSISGLEVGSQ
RRALEDEARLWLLMQQNYADQEGKFSRVLASQTPSAHLEQRFHGADEYAGLNDLRGFSSR
MVDQRQNLDQSLYAHLSQQKLANGHSSNGYHHNVLDEFQCRNEVGRMAELQRNDRLGLNG
YYAGNGNLTFQGSRSGDVFARVFGM
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgatgagcaatgaagaagagaaaaggtgtcctctttgtgccgaagaaatggac
tggaccgatcagcaatttaagccttgcaaatgtggttatcaggtatgtgtttggtgttgg
catcacataatggacatagcagagaaagaggcatccgagggacgatgtcctgcatgtcga
actaaatatgaaaaggataaagttgtggcaatgcaagcaaattttgaaagggcagagaac
aacaattcaaatcggaaaagtaaaccaccaaaggcaaagccaaaagctaacgaagtcagg
aaggatcttacaaatgttcgggtcattcaacgtaaaatggcatatgtgactgggctgcct
cttagtcttgcagatgaagatctcttacagcggaaggaatattttgggcaatatgggaaa
atttctaaaatttctctttctcggacggccggtggttcaatccagctattaaccaatgat
acctgtagtgtatatattacgtactctaaagaggaagatgccatacagtgtattcaattt
gtacatggttttgtcctggaaggaaggtatttgagagcatcatttgggactgcaaaatat
tgtcatgcttggttgagaaacatgccttgcagtaatccttcttgtctatatttgcatagc
cttggcgctgatgaagatagttttggtaaagatgaggtagctgcaattcatacaagaagt
agggttcaacaaattgttggtgccactagtagtgcaatgaagcgctcaggaaatgtctta
ccacctccaattgatgaattgtccaatactagctttacttctacagagaattctaccatc
cgaagtgcaggtgtaactaatgatacagtggatcaccgtagctatatggctcgtgtagtc
ccttctagcgataaggatggaggtgctggtgaaccaaacggaatgacaagttttgtagat
gttggactgtctaatagttctcgtgcagagaaagatggaaatagcagtgaggatagtaga
attttggatttgtgttccaatctatcttccataccaattaacaaagataatcatgctcaa
gaaacatattctgatagagttctatttgaagttccgtctcctaaccagcctgtcaatcat
ttgagggatcaaaacactacagaaatttcagatgaaccattcagggaagactccacatct
tttgatggtcaacgatcgaaggatttgaatagtatttgtcaagagccatttcttatgtca
tcccgctctgctaaatgtacagaggattatggtggcaattcgctcttgcatagggcatgt
agttcgagtatcaatggcatggagcatagatcattacataaccaagcagaagaaactttg
ccgccactttcatgtgtaaattccacactaaatgatggattacatgacctgaaatttcaa
agttccgtgaagtctgatacaatttatagaggttctaactcattctccaatgaagaaata
gtggagcacttacgaaggactgaaaatggtagcttgaataattttgatgaaagttctgca
ttcaatcccgtgaagaacagtataatttcaaacattttagctatggactttggttcatgt
gaaaattccctgacttcgcgtcacagtttaactggcttgtgtaatgaacctaatgggcag
cgtggttcctggaattctttgcacagtggtcaagggttctcatttatgaagcaagatggg
ttttcaagtcaaagggctgatttggattcttctagtaatatcagtctgatgtcaaatcag
tcatccatccttcatgacttcagagaaaggaaagagcagcatatgcatgagtctcagtat
cagacagtctcaagaccaaaaggtctggctccacccgggttctcaataccctcaagggac
ctacctcctggttttccgttgtctgatgaaattggaggattccctcatactctctctgtt
acttctatctatgcaggaagtcaattagtaaatagttcatcaaatttgattcacccccca
tcaacgagaagcactagaactgcaggtgaggctgattttgttgaccctgccatactaagt
tgtggtaaaggcaagccaacaaatggtttaagtatctcaggcctggaagttgggtctcag
aggagagctttggaagatgaggcaaggctctggcttctgatgcaacaaaattatgctgat
caagaagggaaattctcacgtgttcttgcttcacaaactccatctgcacatctggagcag
aggtttcacggtgcagatgagtatgctggcctaaatgacttacgtggcttttcatcaagg
atggtggatcagcggcaaaaccttgatcaatctctgtacgcacacttatcccagcagaag
cttgcgaatggccacagttctaatggctaccatcataacgttttggatgagttccaatgt
agaaatgaagttggcaggatggcggaacttcagagaaatgacagattaggtctcaacgga
tactatgctgggaatggaaatcttacattccaggggtccaggtccggcgatgtatttgcc
agggtgtttgggatgtaa
DBGET
integrated database retrieval system
