Nicotiana sylvestris (wood tobacco): 104238299
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Entry
104238299 CDS
T05026
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104238299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsy03021
]
104238299
Enzymes [BR:
nsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104238299
Transcription machinery [BR:
nsy03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104238299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
104238299
NCBI-ProteinID:
XP_009790932
UniProt:
A0A1U7XFT6
LinkDB
All DBs
Position
12:102662213..102695347
Genome browser
AA seq
1681 aa
AA seq
DB search
MAQGASEAVEAVHFSFMTDEEVRKHSVVKVTSPNLLDTLGGPLPGGLYDPAMGPLSERSQ
CKSCGQGTVHCPGHCGHIELVSPVFNPLLFNMLHNLLQRTCFYCFHFRASKEEVEKCVSE
LELIAKGDVIGPKTMDVLSPDNSADREESEGSHMSCTTDDLKLQDRSEYNKRPSWDNFQF
TEAMAVIDRILKTKSEKCSNCETKNPKINKPSFGRFHMDISSKQIIFNYIKKSQMFNLQR
TGGSEENLSPEVVNATEPLGEAETSLSMASSDRLENSMARGRQGDEEYIVMQQKDLFSVA
HLPSQVRKIIEHLWENEARLCAFFCNIQGQHLNTPSKVAGPSMFFLDSILVPPIRFRPPA
KGGDSVMEHPHTVLLGKVLQSNIALGNAHSNRAGRSKIISRLMDLQQSVNILFDSKTAAG
PGQKDVGVGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGVPPYFALRLT
YPERVTPWNAGKMRDSIINGPENHPGALSFADRISTVKLPSGNGKNIKKIRMAISRKLPS
SRGAVTQSGRNDEYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM
HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVG
AVLLTMKNTFLTLQEFNQLLYGSGVFAAGPGSTSGNHSNKVSVVDSEGVVQTILPAVWKP
KPLWTGKQVITALLNHLTKGSPPCTVKNKGKIPYPYFLSQSRLAEYQSREEEEDRTAENK
FLIWKNELVRGVIDKAQFGKFGLVHTIQELYGANRAGILLSALSRLFTIFLQLHGFTCGI
DDLVILPHYDIRRKEELEGGDVGEDAHCDFVKFKPGEIGPLELQLEIEKAISGNKEAATA
ALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQ
ELEGKRVPRMVSGKTLPCFPPWDFASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTA
VKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALK
DNQETICQKLRQGRKLNSYIERLPDGLEEKVKQFWGKKTKKLEKKLEKRVKKEEISKQLK
KEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP
RLQEILMTASDAIKTPIMTCPFLGWKSKDDAQSLLAEVKKITVADMIESMEVNLLPLSIY
NHQVSQLYKLTVKLKEHEFVSSEDCDYTLKYVFLRELEDAIESHLALLSKINGIKNFKSS
SDSVASHETEENASSTRYEEHMLDDDDEAEDERTEEDLSSDAQKRKQQTTDEMDYDDGPE
DEASEAETTAEVEDEKSDQAHEIGNRDEEETGDHGNEEQTSKLYSEESNIKTAKSKTKTT
VQQKKKKETRSKKDSDRSVFIAVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNAGK
IDQCRMVKYDVSENTVMWDEKQTKNQSQDTDSAYWALKAAGVDFGTFWEMQDDLDVNRIY
TNNIRSMLNTYGVEAARAAIIREVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHG
SISESLSPFLKMSFETASKFIVEAASHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLD
I
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggctcagggtgcatcagaggccgttgaggcggttcacttcagttttatgacggatgaa
gaagttcgtaagcatagtgttgtaaaagtcacaagccctaacttgcttgatacattaggc
ggaccactgcctggtgggctttacgatccagcaatgggtccccttagtgagagatctcaa
tgtaagtcatgtggtcaaggtacagttcactgccctggtcactgtggccatattgaactt
gtttcgccggtcttcaatcccctgcttttcaatatgctgcacaatcttctgcaaagaaca
tgcttttattgctttcattttagggcatcaaaagaagaggttgaaaagtgtgtctctgaa
ttagagttaatcgcaaagggtgacgttattgggcccaaaaccatggatgttctctctcct
gataactctgctgatcgggaggaaagtgaagggagccatatgtcatgtacaacggatgat
ttgaaattgcaagatcgttctgagtacaataagaggccatcttgggacaatttccagttt
actgaagctatggcagttatcgatagaattctcaagacgaaatctgagaaatgtagcaat
tgtgaaactaaaaatccaaagatcaataaaccgagttttggacggtttcatatggatatt
tcaagtaagcaaattattttcaattatatcaaaaaaagtcaaatgttcaatctgcagcgc
actggtggaagtgaggaaaatctttcccctgaggtggtaaatgccaccgagccattaggg
gaagctgaaaccagcttatctatggcttcctcggatagattagaaaattctatggcacgt
ggaaggcaaggggatgaggagtatattgtgatgcagcagaaagacttattttcagtagct
catttaccatctcaggtcaggaaaattatagagcatttatgggaaaacgaagctcgtctt
tgtgcattcttctgtaatattcagggtcagcaccttaatacacctagcaaggtggctggg
ccctctatgttctttttggattccattcttgtacctccaatcaggttccgccctccagcc
aaagggggtgattcagttatggaacatccacatactgttcttcttggcaaggtccttcag
tcaaatatagctttgggaaatgcccatagcaaccgggctggaaggtctaagatcattagc
cgcttgatggatcttcaacaatctgtaaacatcctgtttgatagcaaaacagctgctggt
ccaggtcaaaaagatgttggtgtgggcatatgtcagttgttggaaaagaaagaaggtatc
ttccgccagaaaatgatggggaagagagtcaattttgcctgccgatcagttatatctccg
gatccgtatttatctgtcaatgaaattggagttccaccatattttgctttaagactaacc
tatcctgagcgggtcacgccttggaatgctggtaaaatgagagattctatcatcaatggg
cctgaaaaccatcctggggctctctcttttgctgatagaatatctactgtgaaactgccg
tcaggcaatggtaaaaatatcaaaaagatccgtatggcaatatctagaaaattgccttct
tcaaggggggcagtgactcagtctgggaggaacgatgaatatgaatttgaaggcaaagtt
gtttaccggcacttgcaagatggggatattgttcttgtgaatcggcagcctacgctacac
aagcccagtataatggctcatgttgtccgtgtactgaaaggagaaaaaactcttcgcatg
cactatgctaattgcagtacctataatgccgattttgacggtgatgaaatgaatgtccac
tttccacaagatgaaatttctcgtgctgaagcatataacattgtaaatgctaacgaacag
tacattgttccgactaagggagatacagttagaggcctgattcaggatcatattgtaggt
gcagtccttcttaccatgaagaatacttttttaacccttcaagagttcaaccagcttctg
tatggatctggtgtgtttgctgctgggcccggttcaacttctggaaatcattcaaataaa
gtttctgtagtagattctgaaggtgttgtacaaactatcttgcctgctgtctggaaacca
aagcctctttggacagggaagcaggtcatcactgcattactaaatcatctgacaaagggt
agtccaccttgtaccgtgaaaaacaaagggaaaattccatatccgtatttccttagccag
agtcgcctagctgagtatcagtcaagagaagaagaagaagatagaaccgctgaaaataag
ttcttaatttggaaaaatgagcttgtgcgtggtgtaattgacaaggctcagtttggaaaa
tttggtttagttcatacaattcaggagctttatggggccaacagagcagggattttactt
tctgctctgagtcgtttatttactattttcttgcagcttcatgggttcacttgtggtatt
gatgatcttgtcatcttaccacattacgatattcggaggaaggaggaacttgaaggaggg
gatgttggagaggacgctcattgtgattttgtgaagttcaagcctggagaaataggccct
ttggagctccaactagaaattgagaaagccataagcggcaataaagaagctgccacagca
gccttagatatgaagatgaaaaataaactggcaaataaaggctcacaatttaataaagag
ttgctgctaaagggattgctgaaaccttttcccagaaactgcattgcccttatgaccatt
actggggcaaaggggagtacggttaattttcaacaaatttcctcttatctgggccaacaa
gagttggaaggaaaacgagtgccacgaatggtttctggaaagacattgccctgttttcca
ccatgggattttgcttctagggcaggaggctatgtcagtgatcgatttctttctggactt
cgtccccaggagtactactttcattgcatggctggtcgtgaaggattagttgatactgct
gtcaaaacatctcgcagtggatatctacaaaggtgcttgataaaaaatctggaatctctt
aaagtctgttatgattatactgtccgtgatgcagatggttcaattatccaattttattat
ggagaagacggtgttgatgtacatcgaacaagttttctcaaaaacttcaaagcactgaaa
gataatcaagaaactatttgccaaaagttgcggcaaggacggaagctcaattcctatatt
gaaaggttgcctgatggcctggaagaaaaagtgaagcaattctgggggaaaaaaacaaaa
aagttagagaagaaactagagaagcgagtgaagaaggaagagatatcgaagcaactgaaa
aaggaggaggtggactttctagaattagtgggacaaaaatacttctcaagtttggcagat
tcaggagagccagttggtgtccttgctggtcagtctgtaggtgaaccgtcaacccagatg
acattgaacacttttcatcttgccggccgtggagaaatgaatgtcactcttggaattcca
cgtcttcaggagattctgatgactgcctctgatgctattaagactcccatcatgacgtgc
cccttccttggctggaaatcaaaggatgatgcccagtctcttttggccgaagtgaagaag
atcactgtcgctgatatgattgagagtatggaagttaatcttttgccactgtcaatatac
aaccatcaagtttctcaactttacaagctcacagttaagctgaaagagcacgagtttgtg
tcatcagaagattgtgattataccctaaaatatgtgttcttaagggagttggaggatgca
atagaaagtcatttggccttgctctctaaaattaatggtataaagaacttcaagtcaagc
tcagactcagtggcttcacatgagactgaagaaaatgcttccagcaccagatatgaagaa
catatgctggatgatgatgatgaagctgaggacgaaagaactgaagaagatcttagttca
gatgcacaaaaaagaaaacagcaaaccactgatgagatggattatgatgatggtcctgaa
gatgaagctagtgaagctgagaccactgctgaagttgaagatgagaaaagtgaccaagca
catgagattggaaatagggatgaagaggaaactggagaccatggcaatgaagagcaaaca
tctaaattgtactctgaggaatcaaatatcaaaacagctaagtcgaagaccaaaacaact
gtccaacagaagaaaaagaaggaaacacgtagcaaaaaggattcagacaggtctgtcttt
attgctgtggagggactgcattttgaggtccactttagattcgtcaatgaacctcatatc
ttgttagctcaggttgcccaaaagactgcaaagaaagtgtatattaagaacgccggtaaa
atcgaccaatgcagaatggtcaagtatgatgttagtgaaaatactgtgatgtgggatgaa
aagcaaacaaagaatcaaagccaagacactgattctgcttattgggccctaaaagcagct
ggagtggattttggtaccttttgggaaatgcaagatgaccttgatgttaatcgaatatac
acaaataatattcgctctatgttgaatacttatggagttgaagctgcccgggcagcaatc
atacgagaggttaagactgtttttggaatatatggggttgagattgatttccgacatttg
agcctaatagctgactacatgactcatacgggtggataccagccaatgagcagacatgga
agcatatccgagtctttgtcaccgttccttaaaatgtcttttgaaacggcatccaaattc
atagttgaagcagcgtctcatggtttgactgacaacttggagacaccatcctccagaatt
tgcctagggttgccggtgaaaatgggtaccggttgttttgacataatgcagaagctagat
atttga
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integrated database retrieval system
