KEGG   Nicotiana sylvestris (wood tobacco): 104238444
Entry
104238444         CDS       T05026                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018  RNA degradation
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104238444
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104238444
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104238444
   03041 Spliceosome [BR:nsy03041]
    104238444
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104238444
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104238444
Spliceosome [BR:nsy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104238444
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 104238444
NCBI-ProteinID: XP_009791100
UniProt: A0A1U7XX52
LinkDB
Position
9:5022351..5024995
AA seq 98 aa
MASGPGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDANLDMSKLRAHPLKPVVH
NT seq 297 nt   +upstreamnt  +downstreamnt
atggctagtggacctgggcttgagtctcttgtcgatcaaaccatctcagttattacaaac
gatgggcgaaatatagtgggagttttgagaggatttgaccaggctacaaatttgattcta
gatgaatctcatgagagggtgtattcaacaaaggaaggtgtacagcagctcgtcttaggt
ctttatatcataagaggggacaacataagtgttgttggggaattggatgaagagttagac
gcaaacttggatatgtcgaaacttagagcacatccattaaagccagttgttcactga

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