Nicotiana sylvestris (wood tobacco): 104238444
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Entry
104238444 CDS
T05026
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104238444
09123 Folding, sorting and degradation
03018 RNA degradation
104238444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104238444
03041 Spliceosome [BR:
nsy03041
]
104238444
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104238444
mRNA degradation factors
5'-3' decay
Lsm complex
104238444
Spliceosome [BR:
nsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104238444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
104238444
NCBI-ProteinID:
XP_009791100
UniProt:
A0A1U7XX52
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Position
9:5022351..5024995
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AA seq
98 aa
AA seq
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MASGPGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDANLDMSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggctagtggacctgggcttgagtctcttgtcgatcaaaccatctcagttattacaaac
gatgggcgaaatatagtgggagttttgagaggatttgaccaggctacaaatttgattcta
gatgaatctcatgagagggtgtattcaacaaaggaaggtgtacagcagctcgtcttaggt
ctttatatcataagaggggacaacataagtgttgttggggaattggatgaagagttagac
gcaaacttggatatgtcgaaacttagagcacatccattaaagccagttgttcactga
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