Nicotiana sylvestris (wood tobacco): 104238492
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Entry
104238492 CDS
T05026
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104238492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104238492
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104238492
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104238492
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
104238492
NCBI-ProteinID:
XP_009791159
UniProt:
A0A1U7XW44
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Position
3:complement(37400053..37436571)
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AA seq
854 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNVVGELENQIDTFEAELEGLSVKKGKQRPPRLVHLETSIVRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSTLPLDKVES
LEDLVTVGPPGLVKGVTVASAVLSVKNSLASSPAQSSVSVTSSAQQAACVQDQADETASQ
DSSSEAVARTPPPKSSAVAASAPTTPAGSHATQGAVAALSPTSMSNAIKEDDVTSFPGRK
PSPALNETALRGVNRGSLSNQPVASITLGSGGAATGNGGLGAIPSASEVTKRNTLGSEDR
LGSNAMGQALVSPLANRMMMSQAAKATDGIGVADGANPGDATVMTGRVFSPSVGPGMQWR
PGSSFQNQNEAGQFRGRTEIAPDQREKFLQRFQQVQQQGQSNLLGIPPLSGGNLKQFSSQ
QQNPLLPQFNSQSSSVSPQLGLGVGVQASSINSVASSASLQQQPDAGHSKVEDLQQQQTL
PEDSSTDSAANPGPGKNLLNEDDMKASYGLDTPMQGGVNGSIAEPSPRPRDIDLSPGQPL
QSSQPSGSLGVIGRRSVADLGAIGDNLSASTANSGGMHDQLYNLQMLESAFYKLPQPKDS
ERAKSYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQYL
AAKELKKQSWRYHRKYNTWFQRHEEPTVATDDFEQGTYVYFDFHIANDEQHGWCQRIKQE
FTFEYNYLEDELIV
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgaaagctacagggtgaaatcgatcgagttctgaagaaagttcaagaa
ggcgttgatgtcttcgatagcatatggaacaaggtttacgacacggataatgcgaaccag
aaggaaaaatttgaagcggatttgaaaaaggagatcaaaaagcttcagaggtatagagac
caaatcaaaacatggattcaatcaagtgaaatcaaagataaaaaggtaagtgcctcgtat
gaacaagcattaatggatgctcgtaagcttattgagcgtgaaatggagcgattcaaaata
tgtgagaaagaaactaagaccaaagcattttcaaaagaaggtttgggtcaacaacctaag
acggacccaagggagaaggccaaatcagagacacgagattggttgaataatgtggttggg
gagctcgaaaatcaaatcgacactttcgaggctgaattggaaggactctcagttaaaaaa
gggaagcaaaggcccccaagattggtacatttggaaacatccattgttcggcacaaggct
cacataatgaaattagagttgatattaagactactggataatgatgaattgagtcctgaa
caagtcaatgatgtcaaggatttccttgacgattatgtggaacgtaatcaggaggacttt
gatgaattcagtgatgttgatgagctttatagcactttaccgcttgataaggtggagtct
cttgaagatctggttactgtcggtccacctggtcttgttaagggtgtcactgttgccagt
gctgttttgagtgtgaaaaattctctggcctcttcccctgctcaatcatcggtgtctgta
acatcttcagcacagcaagctgcttgtgttcaggatcaggctgatgaaacagcatcacag
gacagtagctctgaagcagttgcaaggaccccacctcctaaaagtagtgcagttgctgct
tctgcacccacaacacccgctggcagtcatgcaacacagggtgctgttgctgctttatct
ccaactagcatgtctaatgcgataaaagaagatgacgtgacaagcttccctggtcgaaag
ccttcccctgctcttaatgaaactgctttaaggggtgtcaatagaggttccctatctaac
caacccgtggctagtattacacttggttctggtggtgcagctactgggaatggaggtcta
ggagctattccttcagcttctgaagtcacgaagagaaataccttaggttccgaggatagg
cttggaagtaatgccatgggtcaggctttggtatcccctctggctaacagaatgatgatg
tcacaagcagctaaggctacagatggaattggtgttgctgatggggcaaatcctggtgat
gctacggttatgactggtagggttttctctccttctgttggtcctggtatgcaatggagg
cctggcagttcctttcagaatcaaaatgaagcgggccaattccgtggaagaactgaaatt
gcacctgaccagagggagaagttcttgcaacgatttcagcaagtacagcagcagggtcag
agtaatcttcttggtatacctccacttagtggaggaaaccttaagcagttctcgtcccaa
caacagaatccacttctgccacagttcaattctcaaagctcctctgtctctcctcaactt
ggactgggagttggagtccaagcatctagtattaacagtgttgcctcatctgcatctttg
cagcagcagccagatgcaggccactcaaaagttgaagacttgcagcaacaacagactttg
cctgaagattcttctacagattctgctgcaaatcctgggcccgggaaaaatcttttgaat
gaagatgatatgaaggcttcatatggactagataccccaatgcagggaggagtcaatggc
tctattgctgaaccatccccaagaccaagggatatagatttatctcctgggcaacctttg
caatccagtcagccatctggaagtcttggggttattggtcgaaggagtgttgctgacctt
ggagcaattggtgataacctgagtgcatccactgcaaattctggaggaatgcatgaccaa
ttatacaacttgcagatgcttgaatctgccttttacaaacttcctcaacccaaagattct
gaacgtgcaaagagctatacaccgaggcaccctgcagttacccctccaagctatccccaa
gtacaggcacccattgtcaacaatcctgccttctgggaaagacttggagctgataactac
ggcactgacactctgttctttgcattttactaccaacagaatacttatcagcagtatctg
gctgctaaggagttgaagaaacagtcttggaggtatcacagaaaatataacacatggttt
cagcggcatgaggagcctactgttgcgactgatgactttgaacaggggacatatgtgtac
tttgatttccacattgccaatgacgagcaacatggatggtgccagaggatcaagcaggag
ttcacatttgagtacaattatcttgaagatgagctcattgtataa
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