Nicotiana sylvestris (wood tobacco): 104238692
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Entry
104238692 CDS
T05026
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104238692
03036 Chromosome and associated proteins [BR:
nsy03036
]
104238692
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
104238692
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104238692
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
104238692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
AAA_22
UvrD-helicase
DEAD
AAA_16
Helicase_RecD
SLFN-g3_helicase
Mov-10_helical
ATPase_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
104238692
NCBI-ProteinID:
XP_009791431
UniProt:
A0A1U7XP84
LinkDB
All DBs
Position
6:complement(145006945..145012489)
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AA seq
952 aa
AA seq
DB search
MGSVADKSDDEYSIITDKGDIGFVDFDRYKSACSYNPNGESEIVVISVPFPLIGGKPKSG
IVGETIVDSITIENTTNDSLELWSIKIYDSKPEDSFTLSLMKPPTPCSDMQYVQEFMESF
SLEDRMLRPGQTLTVWLSCKPKEIGLHTSAVHINVGDETVERLVFVLAEDKVSQSLASSR
PYYRDRKKKAPAVDVFAPNAFVVGSRPTRARNQGFRYRLPSYRIPGDIREMIEKEQFPDV
IGEGLRRDNYILYFRILLNIEEIKMEEDMRDYEMESATMKRRGPQFLSLDVPGLAERRPS
LVYGDYIFARLATADASETTPYQGYIHRVEAEEVYLKFDKEFHINHVAGNLYNVQFAFNR
TSVRRLHQAIEATESLNGEILFPSGISRARHIQAARLAPISCTLNKEQTTAVEKILGCKG
GAPYVIHGPPGTGKTRTLIEAILQLHVTRKDARVLVCAPSNSAADHILEKLVSQQNVEVK
DHEIFRLNALTRPLDDVNPSHIRFCNVEVDAFKCPLLRDLRRYRIIISTYASASLLYAEG
IKRGHFSHVFLDEAGQASEPETMVPLSHLLRNETVVVLAGDPLQLGPIVFSKDAENFGLG
TSYMERLFECQLYGDLNENYATRLVRNYRCHPAILQLPSEMFYGGELIACKEDDKASAQT
WVDLLPNKEFPLLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIENKGLKEEDIGVI
TPYRQQVLKIRKALESFDWANVKVGSVEQFQGQEREVIIISTVRSTVTHNDFDRIHYLGF
LSNPRRFNVAATRARSLLVVIGNPHIICKDPYWNKLLWYCADNGSYKGCFLPERLEILEE
DSGRANNWCDDGAQAKSWDCEGAQAKSWDCEGAQANDWDCEGAEAKSWDCEVAQVNNWDY
DQAKNWNDGGTCENEGKQNLQPSPEVQCGTVHQSEYIPDPVMDEAEWSDGWK
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgggctcagttgctgataagtcggatgatgaatattcaataattactgataaaggagac
atcggattcgttgactttgacagatataaatcagcttgtagctacaatccaaatggagag
agcgagatagttgttatatctgttccatttccactgatagggggaaaacctaaatcagga
attgttggtgaaactattgtcgattcaatcacaatagagaataccactaatgattcgctg
gaactctggtcaattaagatttatgactcgaaacctgaggattcgttcactctatctctg
atgaaacctccaactccatgttccgacatgcaatatgttcaagaatttatggagtccttt
agcttagaggatagaatgctacgaccaggtcagacactaacagtgtggttgtcttgtaaa
ccgaaagaaattgggttgcacacatcagctgtgcatatcaatgttggcgatgagaccgta
gaaagattggtttttgtcctggctgaggataaggtctcgcagtcactagcttcgagcagg
ccatactacagagatagaaagaagaaagcaccagcagtagatgtttttgctcctaatgca
ttcgttgtgggttctcgtcctacaagggcacgaaatcaaggattcagatacagacttcct
tcatatcgcattcctggggatataagggaaatgatagagaaggaacagtttcctgatgtt
attggggaaggtttaagaagagataattacattctttattttagaattttactaaatatt
gaagaaatcaagatggaggaagacatgagggactatgaaatggagtccgccaccatgaag
cgaagggggcctcaatttttgtcccttgatgtcccagggctagctgagaggaggccgtca
cttgtttatggggattatatctttgcaaggctagctactgcagatgcaagtgagaccacc
ccttatcagggttatatccaccgagttgaggcggaagaagtgtatttgaagtttgataaa
gaattccacatcaaccatgttgctggaaatctttataatgtgcagtttgcattcaatcgt
acgagtgtgcggaggttacaccaagccattgaagctacagaaagcttaaatggagaaatt
ctctttccatcaggcatatccagagcaagacatatacaagctgccagactggcacctatt
tcatgtacgcttaacaaggagcagacgactgcagttgaaaagatccttgggtgcaaaggc
ggagctccatacgttatccatgggcctcctggtacaggcaaaacaaggactcttatagaa
gctattctccagctacacgttacgaggaaagatgctcgtgttctcgtctgcgcaccttca
aatagtgctgcagaccatatacttgagaaacttgtcagtcagcagaatgttgaagtgaag
gaccatgagatttttaggctgaatgcactcacacgtcctctagacgacgtgaatcctagt
cacattcgcttttgcaatgttgaagttgatgccttcaagtgtcctcttctcagggacctt
agaagatataggattattatatctacatatgctagtgcatctcttctttatgctgaaggt
attaaacggggacatttctctcacgttttcttggatgaggcaggacaggcatcggagcct
gaaaccatggttcctctgtcgcatcttttaaggaacgagacagtagtggtacttgctggt
gatccactgcaacttggtcccatagttttttcaaaagatgctgaaaattttgggttgggg
acgtcatatatggaaaggttatttgaatgccagttatatggtgatctcaacgaaaattat
gctaccagactagtaagaaactatcggtgtcatccagcaattctgcagcttccctcagaa
atgttttatggaggagagttgatcgcatgtaaagaagatgataaagcttctgctcagact
tgggtggacctgcttccaaacaaggaatttccgttgcttttcatcggcatccaaggttgt
gatgaaagggaaggaaacaacccatcatggttcaataggattgaggcaagcaaggtagta
gagatcataagggatctgatagagaacaaaggtctgaaagaggaagatattggggtgata
acaccttacagacaacaagtactgaaaatacgaaaagcccttgagagtttcgattgggct
aatgtaaaggtcggtagtgttgagcaattccaaggtcaggagagagaagttattattatc
tcgaccgtccgatcaactgtaacacacaatgattttgatagaatccactatttaggattt
ttaagcaatccgagaaggtttaatgttgctgctacaagagccagatcgttgcttgtagtt
attgggaatccacatatcatctgcaaggacccctactggaacaagcttttatggtattgt
gcagacaatggctcctataagggctgcttcttacctgaaagactggagatccttgaagag
gattctggacgagcaaataattggtgtgatgacggggctcaagcaaaaagttgggactgc
gaaggagcacaagcaaaaagttgggactgcgaaggggcacaagctaacgattgggactgt
gaaggagcagaagctaaaagttgggactgtgaagtagctcaagttaataattgggattat
gaccaagccaagaattggaatgacggaggcacctgtgaaaacgaagggaaacagaatctt
cagccatctccggaggttcaatgtggtacagttcaccagtcagaatacatcccagaccct
gttatggatgaagctgaatggtctgatggttggaaataa
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