Nicotiana sylvestris (wood tobacco): 104238915
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Entry
104238915 CDS
T05026
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104238915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104238915
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104238915
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
104238915
NCBI-ProteinID:
XP_009791724
UniProt:
A0A1U7XXM5
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Position
11:complement(51547843..51563642)
Genome browser
AA seq
1087 aa
AA seq
DB search
MQRQKSMLSFLKRPSSEDQSSGNNKLKLPNQNAVPLTKNIPDILGTETPPEKLPRQVLPF
NSGHDGNKSSAFSSIRHKFIREKPRIDRDLAKNDSFGIPSLCTKNEGSETLGNPSVSLRL
GSNRSSVSSNRNSNQEGKGSVSLIQGDDHGFGPETPSMQPFVPGLKRVQDDMRTSGDRSD
CSSLNTSKRIKSLEGLNIGRKNLEAEFEMTSKFEWLHPSQIKDANGRMAGDSLYDKRTLF
IPPDALRKMSASQKQYWDVKCKYMDILLFFKVGKFYELYELDAEIGHKELDWKMTQSGVG
KCRQVGISESGIDEAVQKLLARGYKVGRMEQLETSEQAKSRGSTSVIRRKLVHVLTPSTT
SEGNIGPDAVHLLAVKETCNEQENGSTAFGFAFVDCAALKVWVGSISDDASCAALGALLM
QVSPKEVIHNARGLSKDAQKALKKYSLTGPAVPLLSPVQPGADFVDPAEVKNFLDLKGYF
KGSCNKWDHTFDGVTSHDVALCALGSLVNHLERLMLDEVLRNGDILSYEVYRGCLKMDGQ
TLVNLEIFNNNADGSPSGTLYKYLDNCVTSPGKRLLRNWVCHPLKDVEKINHRLDVIDRL
VENSEATLSAAQYLRKLPDLDRLFGRVKASIQSSEALLLPLIGAKILKQRVKVFGLLVKG
LRIGLDLLRLLQKEHLTSSLAKVVSLPVLDGDDGLDKFLGQFEAAIKSDFPNFQDHNATD
FDAETLSILMELFVEKATEWSQVIYAISCVDVLRSFSITAKFSSGIMCRPVILPLSKPTN
FCRETGGPILNIKGLWHPYALAESGGLPVPNDLHLGGNTNICHPRTLLLTGPNMGGKSTL
LRATCLAVIMAQLGCYVPGETCVLSLVDIIFTRLGATDRIMTGESTFFIECTETASVLQN
ATCNSLVLLDELGRGTSTFDGYAIAYAVFRHLIETVNCRLLFATHYHPLTKEFASHPNVT
LQHMACSFKLKSQSSSPTEQELVFLYRLASGACPESYGMQVALMAGIPKIVVESASNAGQ
VMKKMIGESFRSCEQRACFSTLHEEWFKTLLGISKTDGEVNDDLFDTLYCLWHELKLIDP
LAEDVSL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcagaaatctatgctttccttcctcaagagaccttcatcggaggaccaaagc
tccggcaataacaaactcaaacttccaaatcaaaatgcagtccctcttaccaaaaatatt
ccggacattttgggaactgaaactcctcctgagaagctgccacgtcaggttctccccttc
aacagcggccatgatggaaataagtcttctgctttctcttctattaggcacaagtttatc
agagaaaaaccacgcattgatcgggatctagcgaagaatgattcttttgggatcccctct
ctttgtacaaaaaatgaaggatcagaaacactggggaatccttctgtttccttgcggtta
ggctctaatagaagttctgttagttctaatcgaaatagtaatcaagagggtaaaggatca
gtatctcttatacaaggtgatgatcatggttttgggccggaaacaccaagtatgcaacct
tttgtacctgggttaaaaagagtccaagatgacatgcgtacctcaggggataggagtgat
tgctcttcattgaacacaagcaagaggattaagagtcttgagggtttgaatattggaagg
aagaaccttgaagcagagtttgaaatgactagcaagtttgagtggcttcatccatctcaa
atcaaggatgcgaatggtagaatggcaggggactcactctatgacaagcggacactgttt
attcctcctgatgcgttgagaaaaatgtctgcttctcagaagcagtattgggatgtcaaa
tgcaaatacatggacattctgcttttctttaaagtgggaaaattttatgagctgtatgag
ctagatgctgaaattggtcacaaggagctcgattggaaaatgacacaaagtggcgtggga
aaatgtagacaggttggcatatctgaaagtgggatagatgaagctgttcagaagctccta
gcgcgagggtacaaagtaggacggatggaacagttggaaacatctgagcaagcaaaatct
agaggctctacttctgttattcgcagaaaactagttcatgtactcactccttctaccaca
agtgagggtaatattgggcctgatgcagttcatcttcttgcagttaaggagacttgcaat
gagcaagagaatggttcaaccgcttttggctttgcttttgtcgattgtgctgctctgaaa
gtttgggttggttccataagtgatgatgcatcttgtgcagctttgggggctttgctgatg
caagtgtcaccgaaggaagttatacacaatgctaggggtttgtcaaaggatgctcaaaaa
gctctgaaaaaatactcattaacaggtcctgcagtgccactcctgtccccagtccagcca
ggtgctgattttgttgatcctgcagaagtgaaaaatttccttgacttgaaaggttacttt
aaaggatcttgtaataagtgggaccacacctttgatggagtaacgagccatgatgttgct
ttatgtgctcttgggagtcttgtcaatcatttagagcgattgatgttagatgaggtctta
cgtaatggcgatattctatcatatgaagtctataggggttgcctcaaaatggatggacaa
acacttgtcaatcttgagatcttcaacaataatgctgatgggagtccatcaggtacttta
tacaagtatcttgacaattgtgttacttcacctgggaagcggcttttgagaaattgggtt
tgtcatcccctcaaagatgtggagaaaatcaaccataggcttgatgtgattgacagactt
gttgaaaattcagaggctacattatccgctgctcaatatcttcgcaagcttccagatttg
gataggttgtttggacgggttaaggctagcattcaatcttctgaagcactcctactgccc
ttgattggtgccaaaatattgaagcagcgagttaaagtgtttgggttgcttgttaaaggg
ctacggattgggctagatttgttaaggttgttgcagaaggaacatctgacctcttccttg
gctaaagtggtatccttgcctgttctagatggtgacgatgggcttgataagttcctcggc
caatttgaagcggcaatcaagagtgacttccccaattttcaggatcataatgctactgat
tttgatgctgaaacactatccattttgatggagttatttgttgagaaggctactgagtgg
tctcaagtcatttatgccataagttgtgttgatgtgttaagatcattttccattactgca
aaattttcctctggaattatgtgtagaccagtgatcttgcctctttcaaagccaacaaat
ttctgtagagagactggtgggccaatactaaacatcaaggggctttggcatccatatgct
cttgctgaaagtgggggactgcctgttcctaatgatctccatcttggagggaatacaaat
atctgccatcctcgtactttactgttgactggaccaaatatgggaggaaagtcaactctt
ttacgtgccacttgtctggccgtcataatggctcagttgggttgctatgtgcctggagaa
acatgtgtgctttcacttgtggacatcatctttacacgtcttggagcaactgatcgaatc
atgactggtgaaagtaccttctttattgagtgcacagaaaccgcgtcagttcttcaaaat
gctacatgcaattcccttgttcttctggatgaattgggcagaggaacaagcacttttgat
ggatatgctattgcatatgctgtattccgacaccttatagagacggtgaactgccgctta
ctgtttgccacacattatcatccactcactaaagagtttgcttctcatcctaatgtgaca
ttacaacacatggcctgctctttcaagttgaaatctcaaagttcatctccaacagagcaa
gagctggtgttcctttaccgtctagcctctggagcatgcccagagagctatggaatgcaa
gtagcactcatggctggaatcccgaaaattgtggttgaatccgcatccaatgcagggcaa
gtcatgaagaaaatgatcggagaaagttttaggtcatgtgaacaaagagcttgcttttca
acactgcacgaagaatggttcaagacacttctaggaatctcaaagacagatggtgaagtt
aacgatgacctatttgatacattgtattgcttgtggcatgaactaaagctgatagatcca
ctagctgaagatgttagtctctga
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