Nicotiana sylvestris (wood tobacco): 104239178 Help Entry 104239178         CDS       T05026                                  Name (RefSeq) uncharacterized protein   KO K19026   spatacsin Organism nsy  Nicotiana sylvestris (wood tobacco) Pathway nsy04142   Lysosome Brite KEGG Orthology (KO) [BR:nsy00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     104239178  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:nsy03400]     104239178 DNA repair and recombination proteins [BR:nsy03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      104239178 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  104239178 NCBI-ProteinID:  XP_009792039 UniProt:  A0A1U7XZV2 LinkDB All DBs Position 5:complement(142009264..142061638) Genome browser AA seq 3204 aa AA seqDB search MDFANGGEDPAILQLQKWGSSQVQVNLSDFCEGFISPRRELLALLSYHCEALLLPLGKGK SINDPQISKNFRNADTLSSCSVECMVLGKTELGNDCESTSQSIERKPCNINTATVDFERS NSFPSISDVKTVAWGICEDLCSQHDSVPFKELLFVLGHEGVTVHAFCHSYMTSESITPTE QDDVGQGLWVEWGPSTASAQPAGALYDSTAQSNESLEVSDMNGSSPTGERANSCSMEGKK EVSSESAGVKRWLRTFLTEVKTMNSDGKVYTKFPDKSSVPSSASVVSFSNFLSCPQLLEF LFDGCPISHDKQNGNISAEDPTESICTDSTQMSPDALVDQMSTSYKCFSVFSNDAQCLIG FALNTNKNVKTNTTNIDDGTCCKVLVAVARLIDWGMQWVCSVKVGKCPEGRSAIEWPEFR FSHAFLICLNVTGLVSFYVALTGEHIACIDLLNVCGVSPSLVSQEQKNSSLKIRESRIEE KKCGQFINQEGDYVGRRRFKRIFVISHSLTFCVIDEYGLTYVINVDDHIPKKYCSLEKLH PQYQQLGNEMLAAWEVGSAEIGYQRVFSDFFGGKEQSNSSIIRESSFTANTHGERKYGSY GSSLSDATDVNKNRIFGSRSHSCHSRKVFIGIDGSKEDAVVCFSPFGLTRLVKKKYSEGN VKCQLVHSSLHVNLTVNDDSCYNIQVWDAIVDEAIGCSFHGSLYLVTKDGIAVVLPRLSL PSNFYPVEAIGYQQSCYSAGSNYGMHKLHEFESTKRRFSPWKVEVLDKALLYDGPEVADQ LCLENGWDLSVTRIRHLQLALEYLKFEEIEKSLEMLTHVNLAEEGILRMLLAVVYLMSCK VGNDNEVSAASRLLALGTGFATKMIREYGLLQQNSFLSSELIDSRPDETGDLERLQKMAH FLEIIRNLQWRLTYKCKRLGQELVDQGDAVGETDLLQDESRILDVSADVLSLEASNQKGL IPASEMKRNNGEALALMPVDAFDSKNISALDTFEEPSLISERNSVKRVFSVENPKDMIAR WEIDNLDVKTVVKDAILSGRLPLAVLKLHLHRSRDLMSDQENQDTFNEVREVGRAIAYDL FLKGETGLAVATLQRLGEDIEASLKQLVFGTVRRSLRMRIVEVMKGLGYLGPHEWQILEK ISLIERVYPCSSFWSTFSCRHKEFKGVSNGNATKEIKLHLLAPLGRDLVIACGELDGVVL GSWINVNEQPNAPEADDDSTHSSYWSAAAVWFDAWDQRVVDCIVLDQPFLMGVNVLWESQ LDYHIRHSDWLDVSRLLEVIPSYALTSGSLSVSLDGVRSSPVDEYLQKPHDCGSYIYSLE EVDAVCMNVPSVQIFRFSAYSMCSTWLLMFMERELAKKFIFLKDYWGATADIVALLAQSG FIRDVHKSLPMDELAESWSDSVLDISDARTHPHSIEAFHKVIVHYCSQHNLLNFLDLYLE HHKLALNHESVSWMQDATGDNQWAKWLLLQRVKGKEYEASFSNARAVVSHNLVAGNSFST MEIEDIIHTVDDIAEGAGEMTALATLMYAPIPIQDCLSSGSVNRLYSSAQCTLENLRPFL QRFPTLWRALTAACFGQDPTCSIISPKPKLFGYSDLLDYLNWRESVFFSSAHDTSLSQML PCWFPKTVRRLIQLYVQGPLGWQSIADLPVGDPSLLRDIVPSDISPLSWEVAIQKHIEEE LYDSSLKESRVGIEHHLHRGRALAAFNQLLSNRVQKLKSESSRRGQHGTSVQGQTNIQSD VQMLLSPITQSEQLFLSSVVPLAIVHFADSVLVASCAFLLELCGLSPGTLQIDVAALRRI ASFNKSGPCSNHFKQPSPRSSSFHSNTYDNNITESLARGLADDYCQNDWFNQANQKSDQF TTCGRQPSRALMLVLQHLETASLPSSADGVTCGSWLLTGNGDGVELRSQQKAASEHWNLV TTFCQAHQIPVSTRYLAILARDNDWVGFLSEAQIGGYPLETVMQVASKEFGDARLKTHIL TLLKSMQSRKKFSSSSSSDTGEKKNGTSFPDENMYTPAELFGIIAECERQPRPGQALLLQ AKNLCWSLLAAIASCFPDVSPLSCLTVWLEITAARETSAIKVNNAASQIANNVVAAVEAT NSLPASAKAHTVHYNRKIPKRRRLMEPVSVHSLAFTMPDAQKADGNVRIQDMTAEEECEK QVDQDEKLSNDSDEVAGSLSRMVAVLCEQHLFLPLLRAFEMFLPSCSLLPFIRALQAFSQ MRLSEASAHLGSFSARIKEEPHVPTQVGKEGKIGSLWISSTAVKAADAMLSRCPSPYEKR SLLQLLAATDFGDGGSAATYYQRLYWKVNLAEPSLRKNDGLHLGNEPLDDASLLTALEEH GHWEQARNWAKHLEASGGSWKSATHHVTETQAESMVAEWKEFLWDVPEERVALWGHCQTL FLRYSFPPLQAGLFFLKHAEAAEKDLPARELHELLLLSLQWLSGTITQCNPVCPLNLLRE IETRAWLLAVESETQVKSEGEFTLSGREPASGKGSSIIDRTASIITKMDNHINSVRIKSG ERNDTKESNQSHLKTTQMSDSSSSVAILGGAKVKRRAKGFVPSRKSLADPVDRSNGPETS SINFNLKEDSQIPDENLKIEANFSKWEERVGPAELERAVLSLLEFGQIAASRQLQHKLSP GCIPFEFKLVDAALKLAAIATPNNKVSILVLDGELRSIMQSYHLFPNQHVIDALQVLESL AILLTEGRGRGLCMRIISVVKTANVLGIPFSEAFEKHPIELLQLLSLKAQDSFEEAKLLV QSHYMPAASIAQILAESFLKGLLAAHRGGYMESQKEEGPAPLLWRFSDFLKWAELCPSEP EIGHALLRLVATCQGIPHACEVELLILSHHFYKSSACLDGVDVLVDLAFKKVEAYVSEGD FPCLARLITGVGNFHALNFILGILIENGQLDLLLQKFSAAIDANAGTAEAVRGFRMAVLT LLKQFNPNDLDAFAMVYSHFDMKHETASLLESRAEQSSKECSLRSDKDQTDELLASMRYF IEAAEVYSSIDAGNKTRQACAQASLLSLQIRMPDLHFLNLSETNARRALVEQSRFQEALI VAEAYGLNQPGEWALVLWNQMLRPELVEQFVAEFVAVLPLQPSMLLELARFYRAEVAARG DQSQFSVWLTGGGLPAEWAKYLGRSFRCLLRRTRDLRLRYQLATIATGFVDVVDACNRAF DKIPENAGPLVLRKGHGGGYLPLM NT seq 9615 nt NT seq  +upstreamnt  +downstreamnt atggattttgccaatggtggcgaagatcctgcaatactgcagctgcagaaatgggggtcc tcgcaagtccaagtcaacctgtcagacttctgtgaaggttttatttctccaagacgggag ttattagctctgctttcatatcattgtgaagctttactgcttccattgggtaaaggtaaa agtattaatgatccacaaatctctaagaattttcggaatgcggatactttgtcttcctgc tcagtggagtgcatggtactcggtaaaacagagttagggaatgactgtgagagcacttct cagtcaattgagagaaagccgtgcaacataaatacagcgacagtggattttgaaagatca aactctttcccttctatttctgatgtaaaaactgtggcttggggtatatgcgaagattta tgtagtcagcatgacagtgttcctttcaaagaactgcttttcgtgttaggccatgagggg gtaactgtccatgccttttgtcattcttatatgacgagtgagtcaataacacccacagaa caagatgatgtaggtcaagggctatgggtggagtgggggccgtcaacagcctcagctcaa ccagctggagctctgtatgactctaccgcccagtccaatgagtccctggaggtcagtgac atgaacgggtctagtccaactggggaaagagctaatagctgttctatggagggtaaaaag gaggtgtcatctgagagtgctggagtaaaaagatggctgcgtacttttttgactgaagtt aaaacaatgaattctgatggaaaagtgtatacaaagttcccagataaatcatcagttcct tcatctgcttcagttgtctcatttagtaattttctcagctgtccacagcttttggaattt ttatttgatggttgtcctatatcacatgacaaacagaatggtaatatctcagccgaagat cctacagaaagtatatgtacagattccacacagatgtcccctgatgctctagttgatcag atgagcacctcttacaaatgtttcagtgtgttctctaatgatgcacaatgcttgattggg tttgccttaaatacaaataaaaatgttaaaactaacacaacaaatatagatgatggaacg tgctgtaaagttttagttgcagtggccaggttaattgattggggaatgcagtgggtttgc tcggtgaaagtgggcaaatgccctgagggtaggtcagcaattgagtggccagagtttagg ttttctcatgcttttcttatttgtcttaatgttactggcttagtctccttttacgttgca ttaaccggtgaacatatagcatgtatagatctgttaaatgtgtgtggagtttctccttcc ttagtatctcaagaacaaaagaattcatctctgaagattagagaaagtcgtattgaagag aagaaatgtggtcagttcatcaatcaggagggagattatgttggtagaagaaggttcaaa aggatttttgtcatttcccattccttgactttttgtgtgatcgatgaatatggtttaaca tatgtaataaatgtggatgaccatatcccaaagaagtactgttcacttgagaaattacac cctcagtatcaacagttgggtaatgaaatgttggctgcttgggaggtaggttccgctgaa attggctatcaaagggtcttttctgattttttcggtgggaaggaacaaagtaactcatcc attattagagagtcttcttttactgctaatacacacggggaaaggaagtatggctcatat gggagtagcctatctgatgctaccgatgtaaataagaataggatttttggtagtagatca cattcatgccatagcagaaaagttttcattggtatagatggatccaaagaagatgctgtt gtttgtttttctccttttgggctcactcggctagtgaagaaaaaatattctgagggaaat gtcaagtgtcaacttgttcattccagtttacatgtaaacttgactgtaaatgatgacagc tgctataacattcaagtttgggatgctatagttgacgaagctataggttgtagttttcat ggttctttatatttggtcacaaaggacggtattgctgtagttctgcctcgtctttcactt ccttcgaatttctatcctgtcgaagcaattggataccaacaatcttgttatagtgctggc tcaaattatgggatgcataagcttcatgaatttgaaagcacaaaaagacgtttttctcca tggaaagtggaggtcttggataaggctctcttgtatgatgggcctgaagtggcagatcaa ttatgcttggaaaatggatgggacttgagtgttacgcggattcggcacttgcagctggca ttggaatacctaaaattcgaggagattgaaaagtctttagaaatgcttactcatgtcaat ttggctgaagaaggcatcttgaggatgctccttgctgttgtttatctgatgtcctgcaaa gttggtaatgataacgaggtctccgctgcatcaaggcttcttgctttaggaactggcttt gccaccaagatgatacgggaatatggtttattgcagcaaaattcttttctttcttcagag ttgatagatagtagacctgatgaaacaggagatctagaaaggcttcagaagatggctcac tttctggagatcatacggaatctgcagtggcgactcacgtacaaatgcaaaaggctaggc caagaattggtggatcaaggtgacgccgtaggtgagacagatttgttgcaggacgagtcc aggattctagatgtttctgctgatgtcttatctctggaggcatcaaaccaaaaaggtctg attcctgcttctgagatgaagagaaacaatggtgaagcccttgctttgatgcccgtggat gcatttgattccaaaaacatttctgctttggacacgtttgaggaaccatctttaatatct gaaagaaattctgtgaagagagttttttccgtagaaaatccaaaggatatgattgcacgg tgggagattgataatttggatgtgaaaacagttgtcaaagacgctatactttctggtcgt cttcctctggctgttcttaagctgcatcttcatcgttcaagagatttaatgtcagatcag gaaaatcaggatacattcaacgaagttcgcgaagttggaagagctattgcttatgacttg ttcctgaagggtgagactggacttgctgtagcaacacttcaaaggctgggggaagacatt gaagccagccttaaacagttggttttcggtactgttcggagatctctacggatgcgaatt gttgaagtcatgaaaggactcgggtatcttggaccacatgagtggcaaattttagagaag atctcacttatcgagagggtttatccttgcagcagtttctggagtaccttctcttgccgg cacaaagagttcaaaggagtatcaaatggaaatgcaacaaaagaaataaaactgcactta ttggctccattgggtagagacctagttattgcctgtggtgaacttgatggagttgtgttg ggttcatggataaatgtcaacgaacaaccaaatgctcctgaagctgacgatgatagtact cattctagctactggagtgctgctgctgtgtggtttgatgcctgggatcagagagttgtt gattgtatagtgctggatcaacctttccttatgggggtcaatgttttatgggagtcacaa cttgattaccacattcgccatagtgactggttggatgtttcaagacttttagaggtaatt ccatcatatgcattaaccagtggaagcctcagtgtcagtttggatggtgtacgctcttca ccagttgacgaatatcttcagaaacctcatgactgtggcagttacatatattctcttgaa gaggtggatgctgtttgcatgaatgtaccgagtgtccaaattttcaggttttctgcgtac agcatgtgctccacgtggttgctaatgtttatggagcgagaacttgctaagaaatttatt tttctgaaggattactggggagctactgctgatattgtagctcttctggcacagtcaggt tttattcgtgatgtgcataagtctttaccgatggatgagctggctgagagctggtcagac tctgtactagatattagtgatgctagaactcatccacattcaatcgaagcatttcataag gttattgttcactactgttcacagcacaacttgctgaattttctggatctttaccttgag caccacaaattggctttaaatcatgaatcagtttcctggatgcaggatgcaacaggagat aaccaatgggcaaaatggttgctcttacaaagggtcaagggaaaagagtatgaagcgtca ttctctaatgcccgcgctgttgtatcccataatttggttgctggtaacagtttcagcact atggagatagaagacataatacatactgttgatgacattgcggaaggagcaggagaaatg acagctttagccacattgatgtatgctccaattccgattcaagattgcttgagcagtggt agtgttaacaggctctatagttctgcacagtgtacattggagaatcttaggccattcctc cagcgcttccctactttgtggcgtgctctaactgcggcatgttttggacaagatccaact tgcagcattataagtcctaaaccgaaattatttgggtattctgatttattagactatttg aattggcgcgagagtgtgttcttctcttcggcacatgatacttcactctcacagatgctt ccgtgctggttccctaagactgtccggagattaattcagctttatgtacagggcccactt ggttggcaatcaattgcagatttgccggtgggtgatccctctcttctgagggacattgtt ccttcggacatcagccccttgtcctgggaagttgccatccagaaacacattgaggaggag ctgtatgattcttcattaaaggaatctagagttggaattgagcaccatttacatcgtgga cgtgcattggcagcttttaatcagctgctttcaaatagagttcaaaagttgaagtcagaa agttcacgtagagggcagcacggtacttcagtgcaaggacaaacaaacatccagtcagac gtgcagatgcttctttcacctataacacagagcgaacagttgtttctttcatccgtcgtg ccccttgctattgtgcattttgctgattcagtgttggtggcatcttgtgcttttctgttg gagttgtgcggtttatctcccggtaccctccaaattgatgttgcggctttgagaagaata gcatcctttaataaatccggcccttgttccaatcactttaagcaaccttcccccaggagt tcttcatttcattcaaatacttatgacaataatattactgaatctttagcacgaggattg gcagatgattattgccagaatgattggttcaatcaagctaatcaaaaaagtgatcagttc acaacctgtggtagacagccatctcgagctctcatgcttgtcctgcaacacttggaaaca gcaagtcttccgtcatcagctgatggagttacgtgtggctcttggttgttaactggtaat ggtgatggagttgaattgaggtctcagcaaaaagctgcaagcgaacactggaatttggtg acaacattttgtcaggcgcatcaaattcctgtgagcacgagatatcttgctatattagca agagacaatgactgggttggctttctctcagaagctcaaattggaggctaccccttggag acagtgatgcaagttgcatcaaaggagtttggtgatgcacgtctgaaaacccacatacta acacttctgaagagtatgcaatcaaggaagaaatttagctcttcttcaagttcagataca ggagaaaagaagaatgggacatcatttccagatgaaaatatgtatacaccggccgaacta tttggaataatcgctgagtgcgagaggcaaccaaggcctggacaagctcttctcctgcaa gcaaagaatttatgctggtcacttttggctgcaattgcgtcctgttttccagatgtctct ccgttatcttgcctgacagtttggctagaaataactgcagcaagggaaacatcagccatc aaagttaataatgctgcttcccagattgcaaacaatgtcgtggcagctgtggaagcaact aattccctacctgcatctgccaaagcacatacagtgcattataatcgcaaaatcccaaag cgtagacggctcatggagcctgtgtcagtgcattccttagctttcacaatgcctgatgca caaaaggcagatggaaatgtgagaattcaagacatgactgctgaagaggaatgtgaaaag caagttgatcaggacgagaaactttcaaatgactccgatgaagtggctggttctctgtct agaatggttgctgtgctttgtgaacagcatttattccttcctttgctcagagcttttgaa atgtttcttccttcttgttccctcttaccttttatccgagctcttcaggcattttctcaa atgcgcctttctgaagcttcagctcatctcggatccttttctgctagaattaaggaagaa cctcacgtacccacacaagttggaaaagaagggaaaattggtagtttatggataagttct actgctgtgaaagctgctgatgctatgctctcaagatgtccttcaccttatgaaaaaaga tccttattacaactccttgctgccactgattttggtgatggaggttctgctgcaacatat tatcaacggctctactggaaagtaaatttagcggaaccttctcttcgcaaaaatgatggc ctacatcttgggaacgagccactagatgatgcttcacttttgacagcattagaggaacat ggacattgggaacaggcacgcaattgggctaagcatttagaggccagtggtggatcttgg aaatctgcaacgcaccatgttactgaaacacaggctgagtccatggttgcagagtggaag gaattcctttgggatgttccagaagaaagggttgctttatggggtcactgccagactctc tttcttagatattccttcccaccattacaggcaggattatttttcctcaagcatgcagag gcagcggaaaaagatctcccggctagagagcttcatgaactattgttgctttctctgcag tggttgagtgggacgattactcaatgcaacccagtttgtcctttgaatcttttgagagaa attgaaactagagcatggctactggcggttgaatcagagactcaagtgaaaagcgaagga gagtttaccctctctggtcgtgaacctgcaagtggcaagggctcaagcattattgaccga actgcaagcattattactaaaatggataaccacattaattcagtgagaatcaagtctggg gagaggaatgatacaaaggaaagtaaccagtcacatctcaagaccactcagatgtcagat tctagctcttcagttgccatattgggcggtgcaaaagtgaaaaggagagccaaaggtttt gtaccctcaagaaagtctttagctgatccagtggacagaagtaacgggcctgaaactagc tccattaattttaatttaaaggaggattcacagataccagatgaaaaccttaaaatagaa gcaaatttttcgaagtgggaggaaagagttggacccgcggagctagaacgagctgttctt tcactgctggaatttggacaaattgcggcttcccgacagcttcaacataaattatctcca ggctgcataccatttgaattcaaacttgtggatgctgccctaaagcttgctgcaattgcc accccaaacaacaaagtatcgatattggtgctcgatggagaacttcgttctattatgcag tcataccatcttttccctaatcaacacgtgattgatgctctccaggtactggagagttta gcaattctcctaactgaaggtaggggacgcggcctttgcatgcgaataatatcagttgtg aagactgcaaatgttttgggtattccattttcagaagcatttgaaaagcatcctattgaa ctcttacaattgctatctctaaaagcgcaagactcttttgaagaagcaaagctcttagtt caatcacattatatgcctgcagctagtatcgctcaaattcttgctgagtcgtttttgaag ggtttgctagcagcacatcgtggaggttacatggaatctcaaaaagaggaggggcctgct cctttattgtggagattttctgatttcttgaagtgggctgagctttgcccctctgaacca gaaattggccatgctttactgcgtttagttgccacttgtcaaggaataccacatgcctgt gaagttgagcttctcattttgtcccaccacttctacaagtcctcagcatgccttgatgga gttgatgttcttgtagatcttgcattcaaaaaggtggaggcttatgtatctgagggtgat tttccatgtttagctcgcctgataaccggagtggggaacttccatgcacttaatttcatt cttggtatccttattgagaatggtcagctcgatcttcttcttcagaagttttcagctgct atcgatgccaacgctggcactgccgaggcagtaagaggattcagaatggctgttctcaca ttactcaagcaatttaatcccaatgatcttgatgcttttgccatggtttatagccatttt gatatgaagcatgagacggcttctcttttggagtcacgagcagagcaatcaagtaaggag tgctccctccgatctgacaaggatcagactgatgagctcttggcttccatgcggtacttc attgaagctgctgaagtttactcatcaattgatgctggcaacaaaacacgccaagcttgt gcacaggcatcacttctctctctgcagattcggatgccagacttacactttctcaatctg tctgaaactaatgcaaggcgggcactggtcgaacaatcccgtttccaagaagcactaatt gttgctgaagcttatggccttaaccagccaggtgaatgggccctggtactttggaatcaa atgctcagaccagagctcgttgaacagtttgtggctgaatttgttgctgtgctccccctt caaccgtcgatgcttctcgaacttgctagattttatagggctgaagtcgctgcaagagga gatcaatcccagttttccgtgtggttgacagggggagggctcccagctgaatgggcaaag tatctcgggagatcatttagatgtttgttgagaagaactagggacttgaggttgcgatac caactggctaccatcgcaactggttttgtcgatgtggttgatgcatgcaatagagcattc gataaaatccctgaaaatgctggacctcttgtcctgaggaaaggtcatggtggaggttac cttccactgatgtaa

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