Nicotiana sylvestris (wood tobacco): 104239420
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Entry
104239420 CDS
T05026
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104239420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104239420
Enzymes [BR:
nsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104239420
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104239420
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
DsbG_N
Motif
Other DBs
NCBI-GeneID:
104239420
NCBI-ProteinID:
XP_009792347
UniProt:
A0A1U7XJW4
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Position
9:complement(48304406..48309359)
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AA seq
621 aa
AA seq
DB search
MLQRRLFCTRISKTILQSNPGHNHSKWSVKQVTKSNFSATLEEISTFISDSDFIAVSLKN
TGAYSAPWQRILPIDTAHTAYLKAKYAAERFQVLQFAVCPFSIRGSKLIVHPYNFHLFPR
DELKIGMPSYSFSCQSSYLTSMARQGFDFNACIYDGISYLSRSQESAAIDRIGNASHITR
KVQSPSGHTVADSVFAERIKSRVKHWISSCRDTNKKPEDALISALRKIVSGDEVYGSRPC
LSIDVCSERQVHLVLETLKDFVDVIPLLTPAKGGMTMSIRVVLTSSEEDKILLQKELQNE
EKEHNKRIRGFREVIDLISASQKPVVVHNSLNDFTFVHSKFLAPLPPTLDEFKSSLCEVF
PNVLDVTHLMKEISPLKKVNNLPASISYLKQRFFAPVDMEISNQAAEATEVKTLGHDVLK
ISELFAKLYSILKIAPKAPEAAEGHLPDAIECYINLFNPCFASSHGLADEGVSVWTDNTR
KISIKNLVFLWGFRGGTSAGQLKSLLYGSHEVFHNEFDVRLVDKSCAVVVFGNPGFSEVL
LQLMDSGGICTSTLKEMLADGLTAAGYEAYQKVCELGLWEADLASSFERALEENDSFSEA
HSQELPGICWNNDEMINLDDL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgttacagaggcgcttattttgcacgaggatttcgaaaaccatcctccaatcaaacccc
ggacataatcatagcaaatggagtgtaaagcaagttaccaagtccaatttctcagcgaca
ttagaagagataagtactttcatctccgactctgatttcatcgccgtctcattgaagaat
actggggcctactctgcaccctggcagcgtattctgccaattgacaccgcacacaccgcc
tatctcaaagccaaatatgccgccgaacggtttcaggtccttcagttcgccgtttgccct
ttctccattagaggttccaagctcatcgttcacccatacaactttcatttgttccctcgt
gatgagttaaaaatagggatgccttcttatagtttctcttgtcaatcatcatatttgacc
tctatggctcgacaaggttttgatttcaatgcctgcatatatgatggcatatcatattta
tccagatcgcaagaatcagctgcaatagatagaattggaaatgcatcacatattacccgt
aaagtgcaatctccatcagggcatacagttgctgattccgtatttgcagaaaggatcaaa
tctcgagttaagcattggataagttcttgcagagacaccaacaagaagcctgaagatgct
ttaatcagtgccttgagaaaaattgtctcgggagatgaagtatatggatccagaccatgc
ttgagcatagatgtatgcagtgaacgtcaagtgcaccttgtgttggagacactgaaggat
tttgttgatgtcatacctttactaaccccagcaaagggagggatgacaatgtctattcga
gttgttttgacaagttcagaagaagacaaaattcttttacagaaggaacttcaaaatgag
gagaaggagcataacaagcgcattcgtggctttcgagaggtgatcgatttgatttccgct
tctcagaaacccgttgttgtccacaactctcttaatgattttacctttgtccattccaag
ttcttagctccattgccaccaacgctggatgaattcaaaagttcattatgtgaggtcttc
ccaaacgtacttgatgtcacccatcttatgaaggaaatcagccctctgaaaaaagtgaac
aatttgcctgcaagtatctcatatttgaaacaaagattttttgcccctgttgatatggag
atatctaaccaagcagctgaggccacggaagtgaagactctgggacatgatgttttgaag
ataagcgaattgtttgcgaagctgtactccatactgaaaattgctccaaaagctcctgaa
gctgctgagggccatttgcctgatgcaattgaatgctacataaacttgtttaacccttgc
tttgccagttctcatggtcttgctgatgaaggtgttagtgtgtggactgacaatactaga
aaaattagtattaagaatctggttttcctatggggattcaggggtgggacatctgcagga
cagctgaaaagcctcctatatggttcacatgaagttttccataatgaatttgatgttagg
ctagtggataaaagctgtgctgtagttgtttttgggaaccctggcttttcggaagtcctg
ttgcagctaatggattctggaggtatctgtactagtaccctgaaggagatgctggcagac
ggcctgacagccgcaggttatgaggcataccaaaaagtctgtgagttaggtctatgggaa
gcagatttggccagttcattcgaaagggctttggaagaaaatgatagcttctcagaagct
cactcgcaggagcttccggggatatgttggaataatgatgaaatgattaacctggatgac
ctttaa
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