Nicotiana sylvestris (wood tobacco): 104239460
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Entry
104239460 CDS
T05026
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
nsy03015
mRNA surveillance pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104239460
09122 Translation
03013 Nucleocytoplasmic transport
104239460
03015 mRNA surveillance pathway
104239460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104239460
03041 Spliceosome [BR:
nsy03041
]
104239460
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104239460
Spliceosome [BR:
nsy03041
]
Complex C
Other components
EJC/TREX
104239460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
104239460
NCBI-ProteinID:
XP_009792394
UniProt:
A0A1U7XZI6
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Position
5:133475815..133480948
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AA seq
809 aa
AA seq
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MSSPYPIIDNPPIDQLKVTELKEELKRRKLPIKGLKQELVKRLAEAILQEQDAAQSKSEN
DSDSTLGPKDEMAEPVDSENSKDDFDVGNITDKKADEKISEVDAAENRVQSDEGKFSTEE
PVGGAISTMVEKDPIDQFGDAKSSAPTEEDQIAEVSVVQTGEHVSVSVESATALSGQDSL
KYETQNESGDLKEQLENPISNSSLVEEKVSSSILERQVSEVSPVLGFQVKSDFVSTDVSI
GEKTELMDNVIANDVKLELDVKPEMVQLLSSSNVPDDAKLHPMDVEEPHDKKVSTEEPGK
ENDKYPEVSVVQTSDPVSVSIESATALSGQDSQKYEIQNESGDLKEQRENHISNSSLDEA
KVSSSNLETQVSELSPILGFQVKSDSVSPDISIDEKIELKDNVIANDVKLELDVKPEMVQ
LLSSSDVPDDAKLHPMDVEEPHDKKVSTEEPGNENDKYVDIMKTDGNGDSAEKLQLDRSP
GEDSMEEDVSEGKLADSKLDSVKEIDGKKEIEVDANREVGFVASVDDARSAAHIDTNVED
DSPTVLSMKRKLHDQRTATGSNDIIKRQRRWNSEDLKIPNNKKGDAVASTTPKDFFQPSL
RRSFSRSDSMAKEEPPKERVVPPSSKVPTNSLLIENFLRPFTLKAVQELLSKTGTVTNFW
MDAIKTHCFVSFSSVEEAIETRNAVYNLQWPPHGGKLLVAEFVDPQGVKDKVEAPPQSPS
THATPVTTIPAAALPSAQSQPSPRQQMQNKQLQPEKLPPPPLPEKLDPPIVTLDDLFKKT
KATPRIYYLPLSDEQVADKLKAQGKIIKQ
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgccgtatcccattattgataatccgccaattgatcagttgaaggtcacagag
ctgaaagaagagcttaagagacgtaagctacccattaaggggttgaagcaagagttggta
aagcgattagctgaagcaatcctccaagaacaggatgctgctcagtctaagtctgagaac
gatagtgattccacgcttgggccaaaggacgaaatggctgagcctgttgattctgagaat
tccaaggatgattttgatgttggcaatatcacagataagaaagcggatgagaaaataagc
gaggttgatgcagctgaaaacagagtgcaatcggatgaagggaaattctcaactgaggag
ccggttggtggtgctatttctactatggttgaaaaggatccgatagaccaatttggtgat
gcgaaaagcagtgctccaaccgaagaggaccagatagctgaggtcagtgttgtgcaaacc
ggtgaacatgtcagtgtgagtgtagagtctgccacagctttaagtggacaggactcacta
aaatatgaaacccagaatgagagtggagatttaaaagagcagttggagaatcccatttca
aattcttcactagtggaggaaaaggtcagttcatccattctggaaaggcaggtatctgag
gtcagccctgttttagggttccaagtaaaatctgattttgtttccactgatgtttcaatt
ggtgaaaaaacagaactgatggataacgtaatagctaatgatgtcaagttagaattagat
gttaaacctgagatggtgcagctattgtcgagcagtaatgtccctgatgatgcaaaattg
catcctatggatgtagaagaaccacatgacaagaaagtatctacagaagaaccaggcaag
gaaaacgataaatatcctgaagttagtgttgtgcaaaccagtgatcctgtcagtgtgagt
atagagtctgccacagctttaagtggacaagactcgcaaaaatatgaaatccagaatgag
agcggggatctaaaagagcagcgggagaatcacatttcaaattcttcactggatgaggca
aaggtcagttcatccaatctggaaactcaggtatctgagctcagccctattttagggttt
caagtaaaatctgattctgtttcccctgatatctcaattgatgaaaaaatagaactgaag
gataacgtaatagctaatgatgtcaagttagaattagatgttaaacctgagatggtgcag
ctattgtcgagcagtgatgttcctgatgatgcaaaattgcatcctatggatgtagaagaa
ccacatgacaagaaagtatctacagaagaaccaggcaacgaaaacgataaatatgttgat
ataatgaagacggatggcaatggggattctgcagagaagttgcaattagaccgaagtcct
ggtgaggattccatggaggaggatgtttcagagggtaaattagctgattctaagttggac
tcagtgaaagaaatagatggaaagaaagaaattgaagtggacgcgaatagggaggtagga
tttgttgcttctgtggatgatgctaggtcagctgcccatatagataccaatgttgaagac
gatagtcccactgtgctgtctatgaaaagaaaacttcatgatcaaagaacagcaactggg
agcaatgatattataaagaggcagcgtagatggaattcagaagatcttaaaattcctaac
aacaagaaaggtgatgctgtggcctcaactacccccaaggattttttccagccctctttg
agacgtagtttctctagatctgattcaatggccaaggaggaaccaccaaaagaacgtgtg
gttcccccatcatcaaaagtgcctactaattctctcttgatcgaaaattttctgcgccct
ttcaccttgaaagcggtgcaagagctacttagcaagacgggtactgtgacaaatttctgg
atggacgctattaaaacccactgctttgtttctttttcatctgtagaagaagctatagaa
actcgaaatgctgtatacaatctgcaatggcctccacatggaggaaagctacttgttgct
gagtttgttgatccccagggagtgaaagataaggttgaagcaccacctcaatctccttca
actcatgcaactcctgtgaccacaatcccggctgcggccctgccttctgcccagtcccaa
ccatccccaaggcaacagatgcagaacaagcaacttcaacctgagaaacttccaccacct
ccacttcctgagaaacttgaccctccaattgtcactctggatgatctctttaaaaagaca
aaggcaacacctcgcatttactatttgcccttgtctgatgaacaagttgcagataagttg
aaggcgcaagggaagattatcaagcagtag
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