Nicotiana sylvestris (wood tobacco): 104240034
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Entry
104240034 CDS
T05026
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104240034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104240034
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104240034
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104240034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104240034
NCBI-ProteinID:
XP_009793121
UniProt:
A0A1U7XU00
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Position
3:complement(213666045..213667563)
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AA seq
275 aa
AA seq
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MSILPKTESILIREVWIDNLEEEFALIREVVDEFPYIAMDTEFPGVVIRPVGNFKNSYDY
HYQTLKDNVDMLKLIQLGLTFSDEKGNLPKCGTDKYCIWQFNFREFNPNEDVFANDSIEL
LRQSGIDFTKNIEKGIDAKRFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLNLLTCQDLP
DTQADFFTLMNVYFPVIFDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTA
CTFRKLKENFFSCSLEKYAGVLYGLGVENGQNNTH
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattttgccaaaaaccgagtcgattctcatccgagaggtttggattgacaatctg
gaggaagaattcgcgttaatccgcgaagttgtcgatgaatttccgtacattgcaatggat
acggagtttcccggtgtcgtaatccggccggtcgggaattttaagaatagttacgattat
cattaccaaaccctaaaggataacgtggatatgttgaaattgattcagttagggctgaca
ttttcggatgaaaagggcaacttgcccaagtgtgggacagacaagtactgcatttggcaa
ttcaatttccgcgaattcaaccctaacgaggatgttttcgccaatgattcgattgagttg
ttgcgccagagtggcattgattttaccaagaacattgagaagggtattgatgccaagcgc
tttggggagctcttgatgtcgtcagggattgtgctgaatgataatgtgtattgggttact
tttcatagtggctatgatttcgggtacctgttgaatctgttgacttgccaggatttgcct
gatacacaggcggatttctttaccttgatgaatgtgtactttcctgtcattttcgacatc
aagcacttgatgaagttctgtaatagccttcatggtggattgaacaaactcgcggagctc
ttggaggttgagagggttggtgtttgtcatcaagcgggttcagatagcttgctcacagct
tgtacctttaggaagttgaaagaaaacttcttcagttgttcactggagaagtatgcaggt
gtcttgtatggtctaggtgttgagaatgggcagaacaatacccattga
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