Nicotiana sylvestris (wood tobacco): 104240433
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Entry
104240433 CDS
T05026
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104240433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104240433
03041 Spliceosome [BR:
nsy03041
]
104240433
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104240433
Spliceosome [BR:
nsy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104240433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
HPF1
RWD
Motif
Other DBs
NCBI-GeneID:
104240433
NCBI-ProteinID:
XP_009793575
UniProt:
A0A1U7Y466
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Position
4:159541121..159548131
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AA seq
803 aa
AA seq
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MEITMGEPGEILPEHKPEKSPYEVLQQSKASVEEIVSKMLSIKKESAPKSELRELVTQIL
INFVSLRQANRSILLDEDRVKGETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACKDFRS
KYPDIELVPEEEFFRDAPEEIKSSVMSKDNSHNLMLKRLNYELFQRKELCKLREKLEQKK
KALQETIANRKKFLSSLPSHLKSLKKASLPVQHQLGVLHTKKLKQLQYAELLPPPLYVIY
SQLMAQKEAFGENVELEIVGSVKDAQAVARQQANKDTGVSASLESSKVDDDIDEEDDGQR
RRKRPKKIPSKESLEQAGIYQTHPLKVTLHIHDDEIQSTKLVTLKFEYLIKLNIVCVGVE
GSQENPDNDILCNLFPDDTGLELPRQSAKLIDHSIVFDERRTSRPYKWAQHLAGIDFLPE
VSPSLRGFETSNDETAKHAAVISGLSLYRQQNRVQTVVQRIRARKKAQLALAEQFDSLMN
LNWPVLASRSVPWASHDPRCSLHAWVPLCPSPSQVSTLAVAEIEQVQLPTEVVVDGKSAS
SKEEVESTREDGELPSLVPVTSINDTNVTPNKRINFDPSTKLAFISKSASSPIIKGKSPS
FKKYGDDADLILESDSEVDDTVQVGQDSNNTPGLAGFSDKSWVDCKVQEYCLVLTRKMDN
EERKMKLESKIKISKEYPLRPPLFTLSLYEAIQSENFSMVDSSVWYNELRSMEAEVNAHI
INAIPADEENLVLAHQVRCLALLFDFYAEDGESSSEKRKSTSVIDVGLCKPMTGQLVARS
FRGRDHRKMISWKDSSCTPGYPY
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggagataaccatgggggaacccggcgaaatactaccggagcacaagccggaaaagtct
ccatacgaagttctgcagcaaagcaaagcttcagttgaggaaatcgtttcaaaaatgctg
tccattaaaaaagaaagcgcgccgaaatctgaacttcgcgaactcgtcactcagatttta
atcaatttcgtctctctacgtcaggcaaatagatcaatcttgctcgatgaggatcgcgtg
aaaggtgaaacggaacgtgcaaaagctcccgtcgacttcaccacgctgcagcttcacaac
ttgatgtatgaaaaaagtcattatgtgaaagctataaaggcttgcaaagatttcaggtca
aaatatcctgatattgaactggttcccgaggaagaattctttagagatgcacctgaggag
ataaaaagctctgttatgtcaaaggacaactcacacaatttgatgctaaagcggctcaat
tatgagctattccagcgcaaagaattatgcaagcttcgtgagaaactggaacagaaaaaa
aaggctctacaggagaccattgcaaacagaaagaagttcttgtcaagtctcccgtcacac
ctaaaatcactcaagaaagcatccttgccggtgcagcaccaacttggagttctgcacaca
aaaaagttgaagcagttgcaatatgcagagttgcttcctccgcctctctatgttatttat
tcacagctaatggcccaaaaagaagcctttggagaaaatgtagagctggagattgttggt
agtgtgaaggacgctcaagctgttgcccgtcagcaagcaaataaagacactggtgtgtct
gccagcttagagagctctaaagttgatgatgatatagatgaggaagatgatggacaacgg
agaagaaagcgtcccaaaaagatacccagcaaggaaagtctggagcaggctggaatttat
caaactcacccacttaaagtcacacttcatatacacgatgatgagatacaatctacaaaa
cttgtcaccttgaagtttgagtacttaattaagttgaatattgtgtgtgttggagttgaa
ggctctcaagagaatcctgataatgacatcttatgcaatttatttccggatgacacaggc
cttgagcttccacgccagtcagctaagctaattgatcattctattgtgttcgatgaaagg
agaacgtcacgaccatacaagtgggcccagcatctggcaggcatcgactttttacctgag
gtgtcaccatcacttaggggttttgagacttcaaatgatgaaacagcaaaacacgctgct
gttatctctggtctatcattgtatcggcagcaaaatcgggtgcaaacggttgtgcaacgg
attcgtgctcggaaaaaggctcagctggctctagcggagcagttcgactctctaatgaac
ctaaactggccagttctagccagtagaagtgttccttgggcctcacacgatcctcgctgt
agtttgcatgcatgggtccctctttgtccatctcctagtcaggtttcaacattggctgtc
gcagaaatagaacaagttcagcttcctacagaagttgtggtggacgggaaatctgcctct
tcaaaagaagaggtagaaagcacgagggaggatggggagcttccatctttagttccagtc
acttctataaatgatactaatgtcactccaaataaaagaatcaattttgatccgtccaca
aagctggctttcatttcaaagagtgccagctctccaattataaaggggaagtcaccaagt
tttaagaaatacggagatgatgcagatcttattctggaatcagatagtgaagtggatgat
actgtgcaggttgggcaggatagtaataatacccctggacttgctgggttcagtgacaag
tcatgggtggactgcaaggttcaggaatattgtctcgttctgacaagaaagatggataac
gaggaaagaaaaatgaaattggaatccaagatcaaaatcagcaaggagtatccacttagg
cctcctcttttcacattgagcctttatgaggcgatacagtcggagaacttttctatggtg
gatagttctgtgtggtacaatgaacttcgcagcatggaagcagaggtcaatgctcacata
ataaacgctatacctgcagatgaagaaaacttagtcttggctcatcaggttcgttgtctt
gccttgctgtttgacttttatgctgaagatggggagtcatcgtctgagaagagaaagagc
acttctgtgattgatgttggtttgtgcaaacctatgactggtcagcttgtcgctcgatca
tttagaggtagagatcataggaagatgatctcatggaaagacagctcttgcacccctggc
tatccgtactaa
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